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PLS3-AS1 PLS3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927352, updated on 10-Oct-2023

Summary

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Official Symbol
PLS3-AS1provided by HGNC
Official Full Name
PLS3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:50343
See related
Ensembl:ENSG00000271826 AllianceGenome:HGNC:50343
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
Xq23
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (115518189..115562731, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (113926571..113971096, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (114752497..114797058, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene tubulin alpha pseudogene 6 Neighboring gene uncharacterized LOC124905206 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like protein 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:114741988-114742523 Neighboring gene uncharacterized LOC124900493 Neighboring gene NANOG hESC enhancer GRCh37_chrX:114782854-114783355 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:114796275-114797050 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:114800420-114800980 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:114813517-114814090 Neighboring gene plastin 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:114855493-114855993 Neighboring gene PHF5A pseudogene 4 Neighboring gene argininosuccinate synthetase 1 pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110383.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK127380, AL589842, DB018483

  2. NR_110384.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two alternate internal exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AK127380, AL589842
    Related
    ENST00000607680.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    115518189..115562731 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    113926571..113971096 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases