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GRM7-AS3 GRM7 antisense RNA 3 [ Homo sapiens (human) ]

Gene ID: 101927347, updated on 10-Oct-2023

Summary

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Official Symbol
GRM7-AS3provided by HGNC
Official Full Name
GRM7 antisense RNA 3provided by HGNC
Primary source
HGNC:HGNC:42444
See related
Ensembl:ENSG00000226258 AllianceGenome:HGNC:42444
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.4) See more
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Genomic context

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See GRM7-AS3 in Genome Data Viewer
Location:
3p26.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (6632358..6805449, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (6622736..6796027, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (6674045..6847136, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376942 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:6325607-6326107 Neighboring gene uncharacterized LOC124909341 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:6531900-6533099 Neighboring gene uncharacterized LOC105376944 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_70950 Neighboring gene MPRA-validated peak4528 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19389 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:6810923-6811530 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:6811531-6812137 Neighboring gene uncharacterized LOC105376943 Neighboring gene YWHAQ pseudogene Neighboring gene uncharacterized LOC105376945 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:6902925-6903916 Neighboring gene mitochondrial ribosomal protein S36 pseudogene 1 Neighboring gene GRM7 antisense RNA 2 Neighboring gene glutamate metabotropic receptor 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • GRM7 antisense RNA 3 (non-protein coding)

Clone Names

  • AC069277.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110123.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    BX113348, DB447952

  2. NR_110125.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' structure resulting in a shorter transcript compared to variant 1.
    Source sequence(s)
    AC023485, BX117432
    Related
    ENST00000417482.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    6632358..6805449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    6622736..6796027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases