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GOT1-DT GOT1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 101927300, updated on 28-Oct-2024

Summary

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Official Symbol
GOT1-DTprovided by HGNC
Official Full Name
GOT1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55848
See related
Ensembl:ENSG00000224934 AllianceGenome:HGNC:55848
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in heart (RPKM 4.0), brain (RPKM 2.5) and 24 other tissues See more
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Genomic context

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See GOT1-DT in Genome Data Viewer
Location:
10q24.2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (99430936..99461833)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (100312862..100343810)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (101190693..101221590)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:101117719-101118386 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:101118387-101119053 Neighboring gene glutamic-oxaloacetic transaminase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3868 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3869 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3870 Neighboring gene uncharacterized LOC124902570 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:101280549-101281428 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:101281429-101282308 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:101282309-101283188 Neighboring gene long intergenic non-protein coding RNA 1475

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183991.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684

  2. NR_183992.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684

  3. NR_183993.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684

  4. NR_183994.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684

  5. NR_183995.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684

  6. NR_183996.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684
    Related
    ENST00000692010.3

  7. NR_183997.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684
    Related
    ENST00000689675.3

  8. NR_183998.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684

  9. NR_183999.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684

  10. NR_184000.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684

  11. NR_184001.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684

  12. NR_184002.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684
    Related
    ENST00000657109.1

  13. NR_184003.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684
    Related
    ENST00000668010.1

  14. NR_184004.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684
    Related
    ENST00000652903.1

  15. NR_184005.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684

  16. NR_184006.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684
    Related
    ENST00000845460.1

  17. NR_184007.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684
    Related
    ENST00000845470.1

  18. NR_184008.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL391684
    Related
    ENST00000845466.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    99430936..99461833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    100312862..100343810
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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