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PDZRN3-AS1 PDZRN3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101927249, updated on 10-Oct-2023

Summary

Official Symbol
PDZRN3-AS1provided by HGNC
Official Full Name
PDZRN3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40814
See related
AllianceGenome:HGNC:40814
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in heart (RPKM 7.8), ovary (RPKM 3.0) and 12 other tissues See more
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Genomic context

See PDZRN3-AS1 in Genome Data Viewer
Location:
3p13
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (73623568..73627899)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (73665056..73669387)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (73672719..73677050)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene PDZ domain containing ring finger 3 Neighboring gene uncharacterized LOC101927296 Neighboring gene RNA, U7 small nuclear 119 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:73671511-73672025 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:73697351-73697852 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:73697853-73698352 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71107 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71127 Neighboring gene PRDX5 pseudogene 1 Neighboring gene uncharacterized LOC105377164

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • PDZRN3 antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ44459, DKFZp313A0237

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_046681.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC117489

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    73623568..73627899
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    73665056..73669387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)