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LOC101927188 uncharacterized LOC101927188 [ Homo sapiens (human) ]

Gene ID: 101927188, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101927188
Gene description
uncharacterized LOC101927188
See related
Ensembl:ENSG00000265069
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.2), thyroid (RPKM 0.3) and 8 other tissues See more
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Genomic context

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Location:
18p11.31
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (6954677..6957419)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (7115229..7117975)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (6954676..6957418)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 668 Neighboring gene SCML2 pseudogene 1 Neighboring gene RNA, U6 small nuclear 916, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:6951323-6951880 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr18:6958646-6959845 Neighboring gene laminin subunit alpha 1 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:7034687-7035886 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr18:7038146-7039345 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:7043747-7043948 Neighboring gene SLC25A51 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:7158211-7158711 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:7203119-7203796 Neighboring gene leucine rich repeat containing 30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126040.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP002409, BC041471
    Related
    ENST00000584722.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    6954677..6957419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    7115229..7117975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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