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LINC01813 long intergenic non-protein coding RNA 1813 [ Homo sapiens (human) ]

Gene ID: 101927165, updated on 10-Oct-2023

Summary

Official Symbol
LINC01813provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1813provided by HGNC
Primary source
HGNC:HGNC:52617
See related
AllianceGenome:HGNC:52617
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01813 in Genome Data Viewer
Location:
2p16.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (56074654..56090382, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (56071601..56087329, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (56301789..56317517, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374690 Neighboring gene MIR217 host gene Neighboring gene microRNA 216a Neighboring gene microRNA 216b Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:56346884-56347414 Neighboring gene uncharacterized LOC100129434 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11502 Neighboring gene coiled-coil domain containing 85A Neighboring gene RNA, 5S ribosomal pseudogene 93

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135590.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011306, BC040311, DB084887

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    56074654..56090382 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    56071601..56087329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)