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LINC01933 long intergenic non-protein coding RNA 1933 [ Homo sapiens (human) ]

Gene ID: 101927115, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01933provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1933provided by HGNC
Primary source
HGNC:HGNC:52756
See related
Ensembl:ENSG00000254226 AllianceGenome:HGNC:52756
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTB-12O2.1
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01933 in Genome Data Viewer
Location:
5q33.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (151958898..152270449)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (152497905..152803421)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (151338459..151650010)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene tRNA-Gln (anticodon CTG) 13-1 Neighboring gene glycine receptor alpha 1 Neighboring gene RNA, 5S ribosomal pseudogene 198 Neighboring gene Sharpr-MPRA regulatory region 1877 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:151297277-151297997 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:151304692-151304904 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:151326719-151327918 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:151431291-151431938 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:151431939-151432585 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:151450292-151450532 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:151456754-151457342 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:151503900-151504459 Neighboring gene MPRA-validated peak5547 silencer Neighboring gene uncharacterized LOC105378236 Neighboring gene uncharacterized LOC105378237 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:151724791-151725393 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16530 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82574 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82576 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82580 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82586 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82589

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_109876.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BE857938, W74779
    Related
    ENST00000524034.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    151958898..152270449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    152497905..152803421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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