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SRP54 signal recognition particle subunit SRP54 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 101926767, updated on 1-Aug-2024

Summary

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Gene symbol
SRP54
Gene description
signal recognition particle subunit SRP54
See related
Ensembl:ENSMFAG00000044371
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
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Genomic context

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See SRP54 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 7 NC_088381.1 (102803595..102900526)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 7 NC_052261.1 (94134337..94181161)

Chromosome 7 - NC_088381.1Genomic Context describing neighboring genes Neighboring gene bromodomain adjacent to zinc finger domain 1A Neighboring gene U7 small nuclear RNA Neighboring gene immunoglobulin-binding protein 1-like Neighboring gene protein phosphatase 2 regulatory subunit B''gamma Neighboring gene septin-7-like Neighboring gene protein only RNase P catalytic subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs. Osada N, et al. Mol Biol Evol, 2005 Oct. PMID 15944441
  2. Rate of evolution in brain-expressed genes in humans and other primates. Wang HY, et al. PLoS Biol, 2007 Feb. PMID 17194215, Free PMC Article
  3. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 7S RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables endoplasmic reticulum signal peptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of signal recognition particle, endoplasmic reticulum targeting IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
signal recognition particle subunit SRP54
Names
Signal recognition particle 54 kDa protein
XP_005561125.2
XP_015308738.1
XP_015308739.1
XP_015309191.1
XP_045253461.1
XP_065403562.1
XP_065403564.1
XP_065403565.1
XP_065403566.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088381.1 Reference T2T-MFA8v1.0

    Range
    102803595..102900526
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045397526.2 → XP_045253461.1  signal recognition particle subunit SRP54 isoform X1

    UniProtKB/Swiss-Prot
    Q4R965
    UniProtKB/TrEMBL
    A0A158SIQ3, A0A2K5VM94, A0A8J8Y7F2, G7PA28
    Conserved Domains (1) summary
    TIGR01425
    Location:2 → 430
    SRP54_euk; signal recognition particle protein SRP54

  2. XM_015453253.3 → XP_015308739.1  signal recognition particle subunit SRP54 isoform X1

    UniProtKB/Swiss-Prot
    Q4R965
    UniProtKB/TrEMBL
    A0A158SIQ3, A0A2K5VM94, A0A8J8Y7F2, G7PA28
    Conserved Domains (1) summary
    TIGR01425
    Location:2 → 430
    SRP54_euk; signal recognition particle protein SRP54

  3. XM_065547494.1 → XP_065403566.1  signal recognition particle subunit SRP54 isoform X4

    UniProtKB/TrEMBL
    A0A2K5VM94

  4. XM_065547490.1 → XP_065403562.1  signal recognition particle subunit SRP54 isoform X1

    UniProtKB/Swiss-Prot
    Q4R965
    UniProtKB/TrEMBL
    A0A158SIQ3, A0A2K5VM94, A0A8J8Y7F2, G7PA28

  5. XM_015453252.3 → XP_015308738.1  signal recognition particle subunit SRP54 isoform X1

    UniProtKB/Swiss-Prot
    Q4R965
    UniProtKB/TrEMBL
    A0A158SIQ3, A0A2K5VM94, A0A8J8Y7F2, G7PA28
    Conserved Domains (1) summary
    TIGR01425
    Location:2 → 430
    SRP54_euk; signal recognition particle protein SRP54

  6. XM_065547492.1 → XP_065403564.1  signal recognition particle subunit SRP54 isoform X1

    UniProtKB/Swiss-Prot
    Q4R965
    UniProtKB/TrEMBL
    A0A158SIQ3, A0A2K5VM94, A0A8J8Y7F2, G7PA28

  7. XM_065547493.1 → XP_065403565.1  signal recognition particle subunit SRP54 isoform X1

    UniProtKB/Swiss-Prot
    Q4R965
    UniProtKB/TrEMBL
    A0A158SIQ3, A0A2K5VM94, A0A8J8Y7F2, G7PA28

  8. XM_005561068.4 → XP_005561125.2  signal recognition particle subunit SRP54 isoform X2

    Related
    ENSMFAP00000025890.1

  9. XM_015453705.3 → XP_015309191.1  signal recognition particle subunit SRP54 isoform X3

    UniProtKB/TrEMBL
    A0A2K5VMA9, A0A8J8XZ04, G7PA29
    Related
    ENSMFAP00000025895.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001283920.1: Suppressed sequence

    Description
    NM_001283920.1: This RefSeq record was removed as a result of standard genome annotation processing. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4R965.1 GenPept UniProtKB/Swiss-Prot:Q4R965

Gene LinkOut

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