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PTGDS prostaglandin D2 synthase [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 101926100, updated on 7-Jun-2024

Summary

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Gene symbol
PTGDS
Gene description
prostaglandin D2 synthase
See related
Ensembl:ENSMFAG00000003811
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
LPGDS
Orthologs
human mouse all
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Genomic context

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See PTGDS in Genome Data Viewer
Location:
chromosome: 15
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 15 NC_088389.1 (2348795..2352844, complement)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 15 NC_052269.1 (106119944..106123998, complement)

Chromosome 15 - NC_088389.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily A member 2 Neighboring gene PAXX non-homologous end joining factor Neighboring gene chloride intracellular channel 3 Neighboring gene uncharacterized LOC135967310 Neighboring gene uncharacterized LOC135967311 Neighboring gene lipocalin 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs. Osada N, et al. Mol Biol Evol, 2005 Oct. PMID 15944441
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prostaglandin-H2 D-isomerase
Names
lipocalin-type prostaglandin D2 synthase
XP_045230035.1
XP_065385864.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088389.1 Reference T2T-MFA8v1.0

    Range
    2348795..2352844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045374100.2 → XP_045230035.1  prostaglandin-H2 D-isomerase

    Conserved Domains (1) summary
    cd19419
    Location:30 → 188
    lipocalin_L-PGDS; lipocalin-type prostaglandin D synthase

  2. XM_065529792.1 → XP_065385864.1  prostaglandin-H2 D-isomerase

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001285069.1: Suppressed sequence

    Description
    NM_001285069.1: This RefSeq record was removed as a result of standard genome annotation processing. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version

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