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ATG4C autophagy related 4C cysteine peptidase [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 101925212, updated on 1-Aug-2024

Summary

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Gene symbol
ATG4C
Gene description
autophagy related 4C cysteine peptidase
See related
Ensembl:ENSMFAG00000038279
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ATG4C in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 1 NC_088375.1 (171820443..171939827, complement)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 1 NC_052255.1 (160119431..160238187, complement)

Chromosome 1 - NC_088375.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102133860 Neighboring gene uncharacterized LOC123572690 Neighboring gene large ribosomal subunit protein uL13-like Neighboring gene dedicator of cytokinesis 7 Neighboring gene angiopoietin like 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rate of evolution in brain-expressed genes in humans and other primates. Wang HY, et al. PLoS Biol, 2007 Feb. PMID 17194215, Free PMC Article
  2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088375.1 Reference T2T-MFA8v1.0

    Range
    171820443..171939827 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015434929.3 → XP_015290415.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 395
    Peptidase_C54; Peptidase family C54

  2. XM_015434914.3 → XP_015290400.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 395
    Peptidase_C54; Peptidase family C54

  3. XM_015434922.3 → XP_015290408.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 395
    Peptidase_C54; Peptidase family C54

  4. XM_045369829.2 → XP_045225764.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 395
    Peptidase_C54; Peptidase family C54

  5. XM_015434924.3 → XP_015290410.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 395
    Peptidase_C54; Peptidase family C54

  6. XM_015434916.3 → XP_015290402.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 395
    Peptidase_C54; Peptidase family C54

  7. XM_015434908.3 → XP_015290394.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 395
    Peptidase_C54; Peptidase family C54

  8. XM_015434906.3 → XP_015290392.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 395
    Peptidase_C54; Peptidase family C54

  9. XM_005543178.4 → XP_005543235.1  cysteine protease ATG4C isoform X3

    See identical proteins and their annotated locations for XP_005543235.1

    UniProtKB/TrEMBL
    A0A2K5TS94, A0A8J8YN27, G7NW13
    Conserved Domains (1) summary
    pfam03416
    Location:77 → 395
    Peptidase_C54; Peptidase family C54

  10. XM_005543179.3 → XP_005543236.1  cysteine protease ATG4C isoform X3

    See identical proteins and their annotated locations for XP_005543236.1

    UniProtKB/TrEMBL
    A0A2K5TS94, A0A8J8YN27, G7NW13
    Related
    ENSMFAP00000002929.1
    Conserved Domains (1) summary
    pfam03416
    Location:77 → 395
    Peptidase_C54; Peptidase family C54

  11. XM_015434940.3 → XP_015290426.1  cysteine protease ATG4C isoform X7

    Conserved Domains (1) summary
    pfam03416
    Location:77 → 395
    Peptidase_C54; Peptidase family C54

  12. XM_045369852.2 → XP_045225787.1  cysteine protease ATG4C isoform X6

  13. XM_045369845.2 → XP_045225780.1  cysteine protease ATG4C isoform X5

  14. XM_065521360.1 → XP_065377432.1  cysteine protease ATG4C isoform X4

    UniProtKB/TrEMBL
    A0A7N9CEU6

  15. XM_065521349.1 → XP_065377421.1  cysteine protease ATG4C isoform X2

  16. XM_045369860.2 → XP_045225795.1  cysteine protease ATG4C isoform X8

Nucleotide Protein
Heading Accession and Version

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