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CGB_A5610C Cell wall organization and biogenesis-related protein, putative [ Cryptococcus gattii WM276 ]

Gene ID: 10188700, updated on 26-Jun-2024

Summary

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Gene symbol
CGB_A5610C
Gene description
Cell wall organization and biogenesis-related protein, putative
Locus tag
CGB_A5610C
See related
FungiDB:CGB_A5610C; VEuPathDB:CGB_A5610C
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cryptococcus gattii WM276 (strain: WM276, serotype: B)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex
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Genomic context

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See CGB_A5610C in Genome Data Viewer
Location:
chromosome: A
Exon count:
7
Sequence:
Chromosome: A; NC_014938.1 (1145516..1147042, complement)

Chromosome A - NC_014938.1Genomic Context describing neighboring genes Neighboring gene Polynucleotide adenylyltransferase, putative Neighboring gene Amino acid transporter, putative Neighboring gene Hypothetical Protein Neighboring gene Hypothetical Protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_014938.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts. D'Souza CA, et al. mBio, 2011. PMID 21304167, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fungal-type cell wall organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in fungal-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Cell wall organization and biogenesis-related protein, putative
XP_003191513.1
  • Similar to TIGR gene model, INSD accession AAW41079.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014938.1 Reference assembly

    Range
    1145516..1147042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003191465.1 → XP_003191513.1  Cell wall organization and biogenesis-related protein, putative [Cryptococcus gattii WM276]

    See identical proteins and their annotated locations for XP_003191513.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E6QY05
    Conserved Domains (2) summary
    cl16916
    Location:26 → 72
    ChtBD1; Hevein or type 1 chitin binding domain
    cl22861
    Location:95 → 307
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases