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csgalnact1b chondroitin sulfate N-acetylgalactosaminyltransferase 1b [ Danio rerio (zebrafish) ]

Gene ID: 101886904, updated on 2-Nov-2024

Summary

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Official Symbol
csgalnact1bprovided by ZNC
Official Full Name
chondroitin sulfate N-acetylgalactosaminyltransferase 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-957
See related
Ensembl:ENSDARG00000089233 AllianceGenome:ZFIN:ZDB-GENE-130530-957
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be located in Golgi cisterna membrane. Orthologous to human CSGALNACT1 (chondroitin sulfate N-acetylgalactosaminyltransferase 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See csgalnact1b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (635379..648898)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (569801..583272)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 14Bb Neighboring gene spindlin b Neighboring gene phospholipid phosphatase 1 Neighboring gene uncharacterized LOC137496320 Neighboring gene arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2Cb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1
Names
zmp:0000000954

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    635379..648898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005166676.5 → XP_005166733.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A8M2BE69, F1RD96
    Related
    ENSDARP00000112348.2, ENSDART00000130358.3
    Conserved Domains (1) summary
    cl11394
    Location:49 → 467
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

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Research Materials