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plcb1 phospholipase C beta 1 [ Danio rerio (zebrafish) ]

Gene ID: 101886206, updated on 2-Nov-2024

Summary

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Official Symbol
plcb1provided by ZNC
Official Full Name
phospholipase C beta 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-231129-3
See related
AllianceGenome:ZFIN:ZDB-GENE-231129-3
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch1073-140o9.2
Summary
Predicted to enable calcium ion binding activity and phosphatidylinositol phospholipase C activity. Predicted to act upstream of or within intracellular signal transduction and lipid catabolic process. [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See plcb1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (3840085..3986440, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (3282985..3305349, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene thyroid peroxidase Neighboring gene phospholipase C, beta 4a Neighboring gene thioredoxin-related transmembrane protein 4 Neighboring gene hydroxyacid oxidase (glycolate oxidase) 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. mTOR-related neuropathology in mutant tsc2 zebrafish: Phenotypic, transcriptomic and pharmacological analysis. Scheldeman C, et al. Neurobiol Dis, 2017 Dec. PMID 28888969
  2. Functional screening of congenital heart disease risk loci identifies 5 genes essential for heart development in zebrafish. Ma J, et al. Cell Mol Life Sci, 2022 Dec 27. PMID 36574072, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylinositol phospholipase C activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    3840085..3986440 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068214666.1 → XP_068070767.1  1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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