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gen1 GEN1 Holliday junction 5' flap endonuclease [ Danio rerio (zebrafish) ]

Gene ID: 101884233, updated on 12-Sep-2024

Summary

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Gene symbol
gen1
Gene description
GEN1 Holliday junction 5' flap endonuclease
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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Genomic context

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See gen1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (287918..304331)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (274393..290942)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene si:ch73-252i11.1 Neighboring gene protein mono-ADP-ribosyltransferase PARP12-like Neighboring gene enoyl CoA hydratase domain containing 3 Neighboring gene si:ch211-51e12.7 Neighboring gene mesogenin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
flap endonuclease GEN homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    287918..304331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009299936.4 → XP_009298211.1  flap endonuclease GEN homolog 1 isoform X2

    See identical proteins and their annotated locations for XP_009298211.1

    UniProtKB/TrEMBL
    A0A8M9PUX7
    Conserved Domains (2) summary
    cl14812
    Location:1 → 197
    PIN_SF; PIN (PilT N terminus) domain: Superfamily
    cl22433
    Location:199 → 340
    H3TH_StructSpec-5'-nucleases; H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination

  2. XM_021475188.2 → XP_021330863.1  flap endonuclease GEN homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PUX7
    Conserved Domains (2) summary
    cl14812
    Location:1 → 197
    PIN_SF; PIN (PilT N terminus) domain: Superfamily
    cl22433
    Location:199 → 340
    H3TH_StructSpec-5'-nucleases; H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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