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ccl20l C-C motif chemokine 20-like [ Danio rerio (zebrafish) ]

Gene ID: 101884175, updated on 2-Nov-2024

Summary

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Official Symbol
ccl20lprovided by ZNC
Official Full Name
C-C motif chemokine 20-likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-200130-1
See related
Ensembl:ENSDARG00000112125 AllianceGenome:ZFIN:ZDB-GENE-200130-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable chemokine activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular space. Orthologous to human CCL20 (C-C motif chemokine ligand 20). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

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See ccl20l in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (40182020..40184550)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (40309616..40311827)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488022 Neighboring gene eph receptor A4a Neighboring gene si:ch211-122l24.6 Neighboring gene chemokine (C-C motif) ligand 34a, duplicate 3 Neighboring gene chemokine (C-C motif) ligand 34a, duplicate 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Pericentromeric hypomethylation elicits an interferon response in an animal model of ICF syndrome. Rajshekar S, et al. Elife, 2018 Nov 28. PMID 30484769, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables chemokine activity IEA
Inferred from Electronic Annotation
more info
  
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within immune response IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
C-C motif chemokine 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    40182020..40184550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005171348.5 → XP_005171405.2  C-C motif chemokine 20

    UniProtKB/TrEMBL
    A0A8M2BIN2
    Related
    ENSDARP00000155172.1, ENSDART00000185494.1
    Conserved Domains (1) summary
    cl00134
    Location:31 → 89
    Chemokine; Chemokine: small cytokines, including a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; distinguished from other cytokines by their receptors, which are G-protein coupled receptors; divided ...
Nucleotide Protein Strain
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