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slc66a2 solute carrier family 66 member 2 [ Danio rerio (zebrafish) ]

Gene ID: 101883969, updated on 12-Sep-2024

Summary

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Gene symbol
slc66a2
Gene description
solute carrier family 66 member 2
See related
Ensembl:ENSDARG00000112922
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
pqlc1
Orthologs
human mouse all
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Genomic context

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See slc66a2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (11431939..11492160)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (11488983..11573305)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene septin 7a Neighboring gene heat shock factor binding protein 1 like 1 Neighboring gene potassium voltage-gated channel, subfamily G, member 2 Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
solute carrier family 66 member 2
Names
PQ loop repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    11431939..11492160
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468289.2 → XP_021323964.1  solute carrier family 66 member 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PH02
    Conserved Domains (1) summary
    pfam04193
    Location:173 → 226
    PQ-loop; PQ loop repeat

  2. XM_021468290.2 → XP_021323965.1  solute carrier family 66 member 2 isoform X2

    UniProtKB/TrEMBL
    A0A2R8QPC7, A0A8M9PSA5
    Related
    ENSDARP00000154908.1, ENSDART00000188065.1
    Conserved Domains (1) summary
    pfam04193
    Location:156 → 209
    PQ-loop; PQ loop repeat
Nucleotide Protein
Heading Accession and Version

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