U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

zfyve9b zinc finger, FYVE domain containing 9b [ Danio rerio (zebrafish) ]

Gene ID: 101882992, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
zfyve9bprovided by ZNC
Official Full Name
zinc finger, FYVE domain containing 9bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-110825-2
See related
Ensembl:ENSDARG00000100764 AllianceGenome:ZFIN:ZDB-GENE-110825-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zfyve9
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in liver development. Predicted to be active in endosome. Orthologous to human ZFYVE9 (zinc finger FYVE-type containing 9). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See zfyve9b in Genome Data Viewer
Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (13058565..13089190)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (13000949..13030785)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene prostaglandin F receptor (FP) Neighboring gene basic transcription factor 3-like 4 Neighboring gene ELOVL fatty acid elongase 1b Neighboring gene MOB kinase activator 3C

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Zfyve9a regulates the proliferation of hepatic cells during zebrafish embryogenesis. Liu N, et al. Int J Dev Biol, 2013. PMID 24307302
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
zinc finger FYVE domain-containing protein 9
Names
zinc finger, FYVE domain containing 9

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    13058565..13089190
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009305915.3 → XP_009304190.1  zinc finger FYVE domain-containing protein 9

    UniProtKB/TrEMBL
    A0A8M3BDK8
    Related
    ENSDARP00000139522.2, ENSDART00000161532.3
    Conserved Domains (2) summary
    cd15729
    Location:128 → 195
    FYVE_endofin; FYVE domain found in endofin and similar proteins
    pfam11979
    Location:413 → 765
    DUF3480; Domain of unknown function (DUF3480)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials