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VCAN versican [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 101867063, updated on 12-Jun-2024

Summary

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Gene symbol
VCAN
Gene description
versican
See related
Ensembl:ENSMFAG00000032675
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See VCAN in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 6 NC_088380.1 (87407051..87518731)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 6 NC_052260.1 (78772571..78883476)

Chromosome 6 - NC_088380.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U109 Neighboring gene transmembrane protein 167A Neighboring gene X-ray repair cross complementing 4 Neighboring gene coenzyme Q-binding protein COQ10 homolog B, mitochondrial-like Neighboring gene uncharacterized LOC101867218 Neighboring gene hyaluronan and proteoglycan link protein 1 Neighboring gene peptidyl-prolyl cis-trans isomerase A-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression of a hyaluronic acid-binding proteoglycan (versican) in the cynomolgus monkey eye. Tajiri K, et al. Int Ophthalmol, 2016 Oct. PMID 26780096
  2. Rate of evolution in brain-expressed genes in humans and other primates. Wang HY, et al. PLoS Biol, 2007 Feb. PMID 17194215, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glial cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuroblast proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in perineuronal net IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
versican core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088380.1 Reference T2T-MFA8v1.0

    Range
    87407051..87518731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005557318.4 → XP_005557375.3  versican core protein isoform X1

  2. XM_005557320.4 → XP_005557377.3  versican core protein isoform X3

  3. XM_005557319.4 → XP_005557376.3  versican core protein isoform X2

  4. XM_045393997.2 → XP_045249932.1  versican core protein isoform X4

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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