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SGMS2 sphingomyelin synthase 2 [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 101867034, updated on 10-Oct-2024

Summary

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Gene symbol
SGMS2
Gene description
sphingomyelin synthase 2
See related
Ensembl:ENSMFAG00000041579
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SGMS2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 5 NC_088379.1 (113440481..113531223)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 5 NC_052259.1 (104763596..104854274)

Chromosome 5 - NC_088379.1Genomic Context describing neighboring genes Neighboring gene 3'-phosphoadenosine 5'-phosphosulfate synthase 1 Neighboring gene uncharacterized LOC135970758 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC123573606 Neighboring gene cytochrome P450 family 2 subfamily U member 1 Neighboring gene large ribosomal subunit protein eL37 Neighboring gene hydroxyacyl-CoA dehydrogenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Substitution rate and structural divergence of 5'UTR evolution: comparative analysis between human and cynomolgus monkey cDNAs. Osada N, et al. Mol Biol Evol, 2005 Oct. PMID 15944441
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ceramide cholinephosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sphingomyelin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylcholine:ceramide cholinephosphotransferase 2
Names
Phosphatidylcholine:ceramide cholinephosphotransferase 2
XP_015306017.1
XP_015306018.1
XP_015306019.1
XP_015306020.1
XP_015306022.1
XP_045248661.1
XP_065401380.1
XP_065401381.1
XP_065401382.1
XP_065401383.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088379.1 Reference T2T-MFA8v1.0

    Range
    113440481..113531223
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015450533.3 → XP_015306019.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/Swiss-Prot
    Q4R763
    UniProtKB/TrEMBL
    A0A2K5WXD6, A0A8J8YSC0, G7P620
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  2. XM_015450534.3 → XP_015306020.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/Swiss-Prot
    Q4R763
    UniProtKB/TrEMBL
    A0A2K5WXD6, A0A8J8YSC0, G7P620
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  3. XM_015450536.3 → XP_015306022.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/Swiss-Prot
    Q4R763
    UniProtKB/TrEMBL
    A0A2K5WXD6, A0A8J8YSC0, G7P620
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  4. XM_065545310.1 → XP_065401382.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A2K5WXD6, A0A8J8YSC0, G7P620

  5. XM_015450532.3 → XP_015306018.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/Swiss-Prot
    Q4R763
    UniProtKB/TrEMBL
    A0A2K5WXD6, A0A8J8YSC0, G7P620
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  6. XM_065545308.1 → XP_065401380.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A2K5WXD6, A0A8J8YSC0, G7P620

  7. XM_065545309.1 → XP_065401381.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A2K5WXD6, A0A8J8YSC0, G7P620

  8. XM_015450531.3 → XP_015306017.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/Swiss-Prot
    Q4R763
    UniProtKB/TrEMBL
    A0A2K5WXD6, A0A8J8YSC0, G7P620
    Conserved Domains (1) summary
    pfam14360
    Location:220 → 293
    PAP2_C; PAP2 superfamily C-terminal

  9. XM_065545311.1 → XP_065401383.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A2K5WXD6, A0A8J8YSC0, G7P620

  10. XM_045392726.2 → XP_045248661.1  phosphatidylcholine:ceramide cholinephosphotransferase 2 isoform X2

    Conserved Domains (1) summary
    pfam14360
    Location:47 → 120
    PAP2_C; PAP2 superfamily C-terminal

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001283255.1: Suppressed sequence

    Description
    NM_001283255.1: This RefSeq record was removed as a result of standard genome annotation processing. Contact info@ncbi.nlm.nih.gov for further information.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q4R763.1 GenPept UniProtKB/Swiss-Prot:Q4R763

Gene LinkOut

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