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SUPT20H SPT20 homolog, SAGA complex component [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 101866501, updated on 10-Oct-2024

Summary

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Gene symbol
SUPT20H
Gene description
SPT20 homolog, SAGA complex component
See related
Ensembl:ENSMFAG00000031911
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SUPT20H in Genome Data Viewer
Location:
chromosome: 17
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 17 NC_088391.1 (16556547..16605964, complement)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 17 NC_052271.1 (15861200..15910273, complement)

Chromosome 17 - NC_088391.1Genomic Context describing neighboring genes Neighboring gene ragulator complex protein LAMTOR3-like Neighboring gene ALG5 dolichyl-phosphate beta-glucosyltransferase Neighboring gene exosome component 8 Neighboring gene large ribosomal subunit protein eL29-like Neighboring gene casein kinase 1 alpha 1 like Neighboring gene large ribosomal subunit protein uL13-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rate of evolution in brain-expressed genes in humans and other primates. Wang HY, et al. PLoS Biol, 2007 Feb. PMID 17194215, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SPT20 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088391.1 Reference T2T-MFA8v1.0

    Range
    16556547..16605964 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015439175.3 → XP_015294661.1  transcription factor SPT20 homolog isoform X3

    UniProtKB/TrEMBL
    A0A2K5UYR2
    Conserved Domains (1) summary
    pfam12090
    Location:65 → 204
    Spt20; Spt20 family

  2. XM_015439187.3 → XP_015294673.1  transcription factor SPT20 homolog isoform X13

    UniProtKB/TrEMBL
    A0A2K5UYX5
    Related
    ENSMFAP00000017641.1
    Conserved Domains (1) summary
    pfam12090
    Location:63 → 225
    Spt20; Spt20 family

  3. XM_005585668.4 → XP_005585725.1  transcription factor SPT20 homolog isoform X10

    See identical proteins and their annotated locations for XP_005585725.1

    UniProtKB/TrEMBL
    A0A2K5UYR2, A0A2K5UYT4
    Related
    ENSMFAP00000017608.1
    Conserved Domains (1) summary
    pfam12090
    Location:63 → 225
    Spt20; Spt20 family

  4. XM_005585664.3 → XP_005585721.1  transcription factor SPT20 homolog isoform X8

    See identical proteins and their annotated locations for XP_005585721.1

    UniProtKB/TrEMBL
    A0A2K5UYU6, A0A2K5UYW4
    Related
    ENSMFAP00000017631.1
    Conserved Domains (1) summary
    pfam12090
    Location:63 → 225
    Spt20; Spt20 family

  5. XM_005585658.4 → XP_005585715.1  transcription factor SPT20 homolog isoform X2

    See identical proteins and their annotated locations for XP_005585715.1

    UniProtKB/TrEMBL
    A0A2K5UYR2
    Conserved Domains (1) summary
    pfam12090
    Location:76 → 215
    Spt20; Spt20 family

  6. XM_005585671.3 → XP_005585728.1  transcription factor SPT20 homolog isoform X12

    See identical proteins and their annotated locations for XP_005585728.1

    UniProtKB/TrEMBL
    A0A2K5UYX5
    Conserved Domains (1) summary
    pfam12090
    Location:64 → 226
    Spt20; Spt20 family

  7. XM_015439184.3 → XP_015294670.1  transcription factor SPT20 homolog isoform X9

    UniProtKB/TrEMBL
    A0A2K5UYR2
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  8. XM_015439185.3 → XP_015294671.1  transcription factor SPT20 homolog isoform X11

    UniProtKB/TrEMBL
    A0A2K5UYU6
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  9. XM_015439181.3 → XP_015294667.1  transcription factor SPT20 homolog isoform X6

    UniProtKB/TrEMBL
    A0A7N9CNV7
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  10. XM_015439173.3 → XP_015294659.1  transcription factor SPT20 homolog isoform X4

    UniProtKB/TrEMBL
    A0A7N9CNV7
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  11. XM_015439182.3 → XP_015294668.1  transcription factor SPT20 homolog isoform X7

    UniProtKB/TrEMBL
    A0A2K5UYU6
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  12. XM_005585653.4 → XP_005585710.1  transcription factor SPT20 homolog isoform X1

    See identical proteins and their annotated locations for XP_005585710.1

    UniProtKB/TrEMBL
    A0A2K5UYR2
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  13. XM_065533158.1 → XP_065389230.1  transcription factor SPT20 homolog isoform X5

  14. XM_015439169.3 → XP_015294655.1  transcription factor SPT20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A2K5UYR2
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  15. XM_065533157.1 → XP_065389229.1  transcription factor SPT20 homolog isoform X3

  16. XM_045377188.2 → XP_045233123.1  transcription factor SPT20 homolog isoform X1

    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  17. XM_065533154.1 → XP_065389226.1  transcription factor SPT20 homolog isoform X1

  18. XM_015439177.3 → XP_015294663.1  transcription factor SPT20 homolog isoform X3

    UniProtKB/TrEMBL
    A0A2K5UYR2
    Conserved Domains (1) summary
    pfam12090
    Location:65 → 204
    Spt20; Spt20 family

  19. XM_005585673.3 → XP_005585730.1  transcription factor SPT20 homolog isoform X12

    See identical proteins and their annotated locations for XP_005585730.1

    UniProtKB/TrEMBL
    A0A2K5UYX5
    Conserved Domains (1) summary
    pfam12090
    Location:64 → 226
    Spt20; Spt20 family

  20. XM_005585655.4 → XP_005585712.1  transcription factor SPT20 homolog isoform X1

    See identical proteins and their annotated locations for XP_005585712.1

    UniProtKB/TrEMBL
    A0A2K5UYR2
    Conserved Domains (1) summary
    pfam12090
    Location:77 → 216
    Spt20; Spt20 family

  21. XM_065533156.1 → XP_065389228.1  transcription factor SPT20 homolog isoform X1

  22. XM_065533155.1 → XP_065389227.1  transcription factor SPT20 homolog isoform X1

  23. XM_005585672.3 → XP_005585729.1  transcription factor SPT20 homolog isoform X12

    See identical proteins and their annotated locations for XP_005585729.1

    UniProtKB/TrEMBL
    A0A2K5UYX5
    Related
    ENSMFAP00000017634.1
    Conserved Domains (1) summary
    pfam12090
    Location:64 → 226
    Spt20; Spt20 family

  24. XM_045377191.2 → XP_045233126.1  transcription factor SPT20 homolog isoform X3

    Conserved Domains (1) summary
    pfam12090
    Location:65 → 204
    Spt20; Spt20 family

  25. XM_065533160.1 → XP_065389232.1  transcription factor SPT20 homolog isoform X14

Nucleotide Protein
Heading Accession and Version

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