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Oma1 OMA1 zinc metallopeptidase [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101842249, updated on 8-Mar-2024

Summary

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Gene symbol
Oma1
Gene description
OMA1 zinc metallopeptidase
See related
EnsemblRapid:ENSMAUG00000015220
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Oma1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429197.1 (35609451..35665312, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801635.1 (16134094..16178271, complement)

NW_024429197.1Genomic Context describing neighboring genes Neighboring gene complement C8 beta chain Neighboring gene DAB adaptor protein 1 Neighboring gene uncharacterized LOC121144003 Neighboring gene chromosome unknown C1orf141 homolog Neighboring gene solute carrier family 35 member D1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial protein processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein quality control for misfolded or incompletely synthesized proteins IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
metalloendopeptidase OMA1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429197.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    35609451..35665312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040757057.1 → XP_040612991.1  metalloendopeptidase OMA1, mitochondrial

    UniProtKB/TrEMBL
    A0A3Q0CNB8
    Related
    ENSMAUP00000015876.2, ENSMAUT00000019808.2
    Conserved Domains (1) summary
    cd07331
    Location:259 → 452
    M48C_Oma1_like; Peptidase M48C, integral membrane endopeptidase

  2. XM_040757060.1 → XP_040612994.1  metalloendopeptidase OMA1, mitochondrial

    UniProtKB/TrEMBL
    A0A3Q0CNB8
    Conserved Domains (1) summary
    cd07331
    Location:259 → 452
    M48C_Oma1_like; Peptidase M48C, integral membrane endopeptidase

  3. XM_040757058.1 → XP_040612992.1  metalloendopeptidase OMA1, mitochondrial

    UniProtKB/TrEMBL
    A0A3Q0CNB8
    Conserved Domains (1) summary
    cd07331
    Location:259 → 452
    M48C_Oma1_like; Peptidase M48C, integral membrane endopeptidase

  4. XM_040757056.1 → XP_040612990.1  metalloendopeptidase OMA1, mitochondrial

    UniProtKB/TrEMBL
    A0A3Q0CNB8
    Conserved Domains (1) summary
    cd07331
    Location:259 → 452
    M48C_Oma1_like; Peptidase M48C, integral membrane endopeptidase

  5. XM_040757059.1 → XP_040612993.1  metalloendopeptidase OMA1, mitochondrial

    UniProtKB/TrEMBL
    A0A3Q0CNB8
    Conserved Domains (1) summary
    cd07331
    Location:259 → 452
    M48C_Oma1_like; Peptidase M48C, integral membrane endopeptidase
Nucleotide Protein Strain
Heading Accession and Version

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