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Acap1 ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101840525, updated on 8-Mar-2024

Summary

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Gene symbol
Acap1
Gene description
ArfGAP with coiled-coil, ankyrin repeat and PH domains 1
See related
EnsemblRapid:ENSMAUG00000020062
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Acap1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429191.1 (48754175..48769287, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801614.1 (7243253..7254878)

NW_024429191.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 95 Neighboring gene potassium channel tetramerization domain containing 11 Neighboring gene uncharacterized LOC101825815 Neighboring gene neuralized E3 ubiquitin protein ligase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429191.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    48754175..48769287 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040748979.1 → XP_040604913.1  arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q0CKZ6
    Related
    ENSMAUP00000029374.1, ENSMAUT00000053468.1
    Conserved Domains (5) summary
    COG0666
    Location:576 → 677
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd13250
    Location:240 → 348
    PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
    sd00045
    Location:559 → 586
    ANK; ANK repeat [structural motif]
    cd08852
    Location:389 → 508
    ArfGap_ACAP1; ArfGAP domain of ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domains 1)
    cl12013
    Location:10 → 189
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature

  2. XM_040748976.1 → XP_040604910.1  arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0CKZ6
    Conserved Domains (5) summary
    cd07639
    Location:18 → 217
    BAR_ACAP1; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1
    COG0666
    Location:604 → 705
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd13250
    Location:268 → 376
    PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
    sd00045
    Location:587 → 614
    ANK; ANK repeat [structural motif]
    cd08852
    Location:417 → 536
    ArfGap_ACAP1; ArfGAP domain of ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domains 1)

  3. XM_040748978.1 → XP_040604912.1  arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0CKZ6
    Related
    ENSMAUP00000022729.2, ENSMAUT00000026732.2
    Conserved Domains (5) summary
    cd07639
    Location:18 → 217
    BAR_ACAP1; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1
    COG0666
    Location:592 → 693
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd13250
    Location:268 → 364
    PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
    sd00045
    Location:575 → 602
    ANK; ANK repeat [structural motif]
    cd08852
    Location:405 → 524
    ArfGap_ACAP1; ArfGAP domain of ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domains 1)

  4. XM_040748977.1 → XP_040604911.1  arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0CKZ6
    Related
    ENSMAUP00000022721.2, ENSMAUT00000026724.2
    Conserved Domains (5) summary
    cd07639
    Location:29 → 227
    BAR_ACAP1; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1
    COG0666
    Location:602 → 703
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd13250
    Location:278 → 374
    PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
    sd00045
    Location:585 → 612
    ANK; ANK repeat [structural motif]
    cd08852
    Location:415 → 534
    ArfGap_ACAP1; ArfGAP domain of ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domains 1)

  5. XM_040748975.1 → XP_040604909.1  arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0CKZ6
    Conserved Domains (5) summary
    cd07639
    Location:29 → 227
    BAR_ACAP1; The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1
    COG0666
    Location:614 → 715
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd13250
    Location:278 → 386
    PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
    sd00045
    Location:597 → 624
    ANK; ANK repeat [structural motif]
    cd08852
    Location:427 → 546
    ArfGap_ACAP1; ArfGAP domain of ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domains 1)

  6. XM_040748980.1 → XP_040604914.1  arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A3Q0CKZ6
    Related
    ENSMAUP00000056683.1, ENSMAUT00000048625.1
    Conserved Domains (5) summary
    COG0666
    Location:530 → 631
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd13250
    Location:194 → 302
    PH_ACAP; ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain
    sd00045
    Location:513 → 540
    ANK; ANK repeat [structural motif]
    cd08852
    Location:343 → 462
    ArfGap_ACAP1; ArfGAP domain of ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domains 1)
    cl12013
    Location:1 → 143
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
Nucleotide Protein Strain
Heading Accession and Version

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