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Kirrel3 kirre like nephrin family adhesion molecule 3 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101838544, updated on 8-Mar-2024

Summary

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Gene symbol
Kirrel3
Gene description
kirre like nephrin family adhesion molecule 3
See related
EnsemblRapid:ENSMAUG00000011422
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Kirrel3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429203.1 (14093607..14650258)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801808.1 (172892..728413)

NW_024429203.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121133424 Neighboring gene uncharacterized LOC121133534 Neighboring gene uncharacterized LOC121133459 Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4 Neighboring gene decapping enzyme, scavenger

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3
Names
kin of IRRE like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429203.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    14093607..14650258
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040729989.1 → XP_040585923.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0CEC4
    Conserved Domains (3) summary
    smart00409
    Location:341 → 416
    IG; Immunoglobulin
    cd05758
    Location:418 → 515
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:163 → 233
    Ig; Immunoglobulin domain

  2. XM_040729991.1 → XP_040585925.1  kin of IRRE-like protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0CEC4
    Related
    ENSMAUP00000010621.2, ENSMAUT00000014494.2
    Conserved Domains (3) summary
    smart00409
    Location:341 → 416
    IG; Immunoglobulin
    cd05758
    Location:418 → 515
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:163 → 233
    Ig; Immunoglobulin domain

  3. XM_040729990.1 → XP_040585924.1  kin of IRRE-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0CEC4
    Conserved Domains (3) summary
    smart00409
    Location:341 → 416
    IG; Immunoglobulin
    cd05758
    Location:418 → 515
    IgI_5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:163 → 233
    Ig; Immunoglobulin domain

  4. XM_021222852.2 → XP_021078511.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A1U8CLZ2, A0A3Q0CEC4
    Related
    ENSMAUP00000010608.2, ENSMAUT00000014481.2
    Conserved Domains (5) summary
    cd05759
    Location:165 → 246
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:418 → 515
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:54 → 143
    IG_like; Immunoglobulin like
    pfam13895
    Location:254 → 331
    Ig_2; Immunoglobulin domain
    cl28434
    Location:335 → 416
    I-set; Immunoglobulin I-set domain

  5. XM_021222854.2 → XP_021078513.1  kin of IRRE-like protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A3Q0CDC8, A0A3Q0CEC4
    Conserved Domains (4) summary
    cd05759
    Location:165 → 246
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:418 → 515
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    pfam13895
    Location:254 → 331
    Ig_2; Immunoglobulin domain
    cl28434
    Location:335 → 416
    I-set; Immunoglobulin I-set domain

  6. XM_021222853.2 → XP_021078512.1  kin of IRRE-like protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A3Q0CD32, A0A3Q0CEC4
    Conserved Domains (4) summary
    cd05759
    Location:165 → 246
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:418 → 515
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    pfam13895
    Location:254 → 331
    Ig_2; Immunoglobulin domain
    cl28434
    Location:335 → 416
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
Heading Accession and Version

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