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Sec31a SEC31 homolog A, COPII coat complex component [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101838460, updated on 8-Mar-2024

Summary

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Gene symbol
Sec31a
Gene description
SEC31 homolog A, COPII coat complex component
See related
EnsemblRapid:ENSMAUG00000013778
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Sec31a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429190.1 (74532131..74586700, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004802956.1 (910..18059, complement)

NW_024429190.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 150C Neighboring gene stearoyl-CoA desaturase 5 Neighboring gene uncharacterized LOC106021629 Neighboring gene uncharacterized LOC121140894 Neighboring gene lin-54 DREAM MuvB core complex component

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COPII-coated vesicle cargo loading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein transport protein Sec31A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429190.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    74532131..74586700 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040747484.1 → XP_040603418.1  protein transport protein Sec31A isoform X1

    Conserved Domains (4) summary
    PHA03247
    Location:792 → 1133
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_040747487.1 → XP_040603421.1  protein transport protein Sec31A isoform X1

    Conserved Domains (4) summary
    PHA03247
    Location:792 → 1133
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_040747485.1 → XP_040603419.1  protein transport protein Sec31A isoform X1

    Conserved Domains (4) summary
    PHA03247
    Location:792 → 1133
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_040747486.1 → XP_040603420.1  protein transport protein Sec31A isoform X1

    Conserved Domains (4) summary
    PHA03247
    Location:792 → 1133
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  5. XM_040747483.1 → XP_040603417.1  protein transport protein Sec31A isoform X1

    Related
    ENSMAUP00000048467.1, ENSMAUT00000057485.1
    Conserved Domains (4) summary
    PHA03247
    Location:792 → 1133
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  6. XM_040747501.1 → XP_040603435.1  protein transport protein Sec31A isoform X15

    Conserved Domains (3) summary
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:533 → 656
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  7. XM_040747498.1 → XP_040603432.1  protein transport protein Sec31A isoform X12

    Conserved Domains (4) summary
    PHA03247
    Location:711 → 1037
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:533 → 656
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  8. XM_040747497.1 → XP_040603431.1  protein transport protein Sec31A isoform X11

    Related
    ENSMAUP00000013859.2, ENSMAUT00000017774.2
    Conserved Domains (4) summary
    PHA03247
    Location:753 → 1050
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:533 → 656
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  9. XM_040747494.1 → XP_040603428.1  protein transport protein Sec31A isoform X8

    Conserved Domains (4) summary
    PHA03247
    Location:753 → 1094
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:533 → 656
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  10. XM_040747489.1 → XP_040603423.1  protein transport protein Sec31A isoform X3

    Conserved Domains (4) summary
    PHA03247
    Location:779 → 1120
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:559 → 682
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  11. XM_040747491.1 → XP_040603425.1  protein transport protein Sec31A isoform X5

    Related
    ENSMAUP00000049781.1, ENSMAUT00000059882.1
    Conserved Domains (4) summary
    PHA03247
    Location:766 → 1107
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:546 → 669
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  12. XM_040747500.1 → XP_040603434.1  protein transport protein Sec31A isoform X14

    Conserved Domains (3) summary
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  13. XM_040747496.1 → XP_040603430.1  protein transport protein Sec31A isoform X10

    Conserved Domains (4) summary
    PHA03247
    Location:750 → 1076
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  14. XM_040747495.1 → XP_040603429.1  protein transport protein Sec31A isoform X9

    Related
    ENSMAUP00000051906.1, ENSMAUT00000039224.1
    Conserved Domains (4) summary
    PHA03247
    Location:792 → 1089
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  15. XM_040747493.1 → XP_040603427.1  protein transport protein Sec31A isoform X7

    UniProtKB/TrEMBL
    A0A1U7RIJ7
    Conserved Domains (4) summary
    PHA03247
    Location:792 → 1102
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:89 → 332
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  16. XM_040747499.1 → XP_040603433.1  protein transport protein Sec31A isoform X13

    Related
    ENSMAUP00000044793.1, ENSMAUT00000053567.1
    Conserved Domains (4) summary
    PHA03247
    Location:788 → 1009
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  17. XM_040747492.1 → XP_040603426.1  protein transport protein Sec31A isoform X6

    Conserved Domains (4) summary
    PHA03247
    Location:787 → 1107
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  18. XM_040747490.1 → XP_040603424.1  protein transport protein Sec31A isoform X4

    Conserved Domains (4) summary
    PHA03247
    Location:792 → 1118
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  19. XM_040747488.1 → XP_040603422.1  protein transport protein Sec31A isoform X2

    Related
    ENSMAUP00000049517.1, ENSMAUT00000069885.1
    Conserved Domains (4) summary
    PHA03247
    Location:792 → 1120
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  20. XM_040747481.1 → XP_040603415.1  protein transport protein Sec31A isoform X1

    Conserved Domains (4) summary
    PHA03247
    Location:792 → 1133
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:13 → 65
    7WD40; WD40 repeat [structural motif]
    cl14807
    Location:572 → 695
    ACE1-Sec16-like; Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16
    cl29593
    Location:84 → 340
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein Strain
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