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Zc3h12b zinc finger CCCH-type containing 12B [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101837457, updated on 8-Mar-2024

Summary

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Gene symbol
Zc3h12b
Gene description
zinc finger CCCH-type containing 12B
See related
EnsemblRapid:ENSMAUG00000026622
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Zc3h12b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429188.1 (42398639..42588834)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801714.1 (1215331..1404366)

NW_024429188.1Genomic Context describing neighboring genes Neighboring gene zinc finger C4H2-type containing Neighboring gene adenylosuccinate lyase-like Neighboring gene 40S ribosomal protein S25-like Neighboring gene LAS1 like ribosome biogenesis factor Neighboring gene eukaryotic translation initiation factor 4B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ribonuclease ZC3H12B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429188.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    42398639..42588834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040744216.1 → XP_040600150.1  probable ribonuclease ZC3H12B

    UniProtKB/TrEMBL
    A0A1U8CBF3
    Related
    ENSMAUP00000048726.1, ENSMAUT00000040344.1
    Conserved Domains (4) summary
    cd18729
    Location:192 → 322
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:107 → 148
    UBA_6; UBA-like domain
    pfam18044
    Location:359 → 377
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:781 → 829
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain

  2. XM_013121302.3 → XP_012976756.1  probable ribonuclease ZC3H12B

    UniProtKB/TrEMBL
    A0A1U8CBF3
    Conserved Domains (4) summary
    cd18729
    Location:192 → 322
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins
    pfam18039
    Location:107 → 148
    UBA_6; UBA-like domain
    pfam18044
    Location:359 → 377
    zf-CCCH_4; CCCH-type zinc finger
    pfam18561
    Location:781 → 829
    Regnase_1_C; Endoribonuclease Regnase 1/ ZC3H12 C-terminal domain
Nucleotide Protein
Heading Accession and Version

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