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Zc3h12a zinc finger CCCH-type containing 12A [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101835199, updated on 8-Mar-2024

Summary

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Gene symbol
Zc3h12a
Gene description
zinc finger CCCH-type containing 12A
See related
EnsemblRapid:ENSMAUG00000012893
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Zc3h12a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429197.1 (17995010..18003893)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801770.1 (2295426..2304297, complement)

NW_024429197.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121143995 Neighboring gene uncharacterized LOC121143938 Neighboring gene U6 spliceosomal RNA Neighboring gene MYST/Esa1 associated factor 6 Neighboring gene Smad nuclear interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 3'-UTR-mediated mRNA destabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, RNase MRP-dependent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoribonuclease ZC3H12A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429197.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    17995010..18003893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005084370.4 → XP_005084427.1  endoribonuclease ZC3H12A isoform X1

    UniProtKB/TrEMBL
    A0A1U7RCR0
    Related
    ENSMAUP00000012627.2, ENSMAUT00000016534.2
    Conserved Domains (1) summary
    pfam11977
    Location:131 → 287
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain

  2. XM_040756666.1 → XP_040612600.1  endoribonuclease ZC3H12A isoform X2

    Conserved Domains (1) summary
    PHA03247
    Location:58 → 267
    PHA03247; large tegument protein UL36; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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