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Celf3 CUGBP Elav-like family member 3 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101834787, updated on 8-Mar-2024

Summary

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Gene symbol
Celf3
Gene description
CUGBP Elav-like family member 3
See related
EnsemblRapid:ENSMAUG00000007850
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Celf3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429193.1 (61909153..61927844, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801899.1 (286768..300759)

NW_024429193.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121142414 Neighboring gene sorting nexin 27 Neighboring gene uncharacterized LOC121142415 Neighboring gene regulatory subunit of type II PKA R-subunit domain containing 1 Neighboring gene mitochondrial ribosomal protein L9 Neighboring gene ornithine decarboxylase antizyme 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CUGBP Elav-like family member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429193.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    61909153..61927844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040752277.1 → XP_040608211.1  CUGBP Elav-like family member 3 isoform X10

    UniProtKB/TrEMBL
    A0A1U8CR25, A0A3Q0CHI3
    Conserved Domains (3) summary
    cd12639
    Location:297 → 375
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 382
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  2. XM_013126448.2 → XP_012981902.1  CUGBP Elav-like family member 3 isoform X10

    See identical proteins and their annotated locations for XP_012981902.1

    UniProtKB/TrEMBL
    A0A1U8CR25, A0A3Q0CHI3
    Conserved Domains (3) summary
    cd12639
    Location:297 → 375
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 382
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  3. XM_040752278.1 → XP_040608212.1  CUGBP Elav-like family member 3 isoform X10

    UniProtKB/TrEMBL
    A0A1U8CR25, A0A3Q0CHI3
    Conserved Domains (3) summary
    cd12639
    Location:297 → 375
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 382
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  4. XM_040752273.1 → XP_040608207.1  CUGBP Elav-like family member 3 isoform X5

    Conserved Domains (1) summary
    TIGR01628
    Location:9 → 301
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  5. XM_040752271.1 → XP_040608205.1  CUGBP Elav-like family member 3 isoform X3

    Conserved Domains (1) summary
    TIGR01628
    Location:9 → 301
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family

  6. XM_040752274.1 → XP_040608208.1  CUGBP Elav-like family member 3 isoform X6

    UniProtKB/TrEMBL
    A0A3Q0CHI3
    Conserved Domains (2) summary
    TIGR01628
    Location:9 → 301
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cl17169
    Location:373 → 422
    RRM_SF; RNA recognition motif (RRM) superfamily

  7. XM_040752275.1 → XP_040608209.1  CUGBP Elav-like family member 3 isoform X9

    UniProtKB/TrEMBL
    A0A3Q0CHI3
    Conserved Domains (3) summary
    cd12639
    Location:322 → 400
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  8. XM_021223893.2 → XP_021079552.1  CUGBP Elav-like family member 3 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0CG16, A0A3Q0CHI3
    Conserved Domains (4) summary
    PRK12323
    Location:214 → 375
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12639
    Location:372 → 450
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  9. XM_021223896.2 → XP_021079555.1  CUGBP Elav-like family member 3 isoform X8

    UniProtKB/TrEMBL
    A0A3Q0CB59, A0A3Q0CHI3
    Related
    ENSMAUP00000005851.1, ENSMAUT00000009615.2
    Conserved Domains (3) summary
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:323 → 401
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  10. XM_013126447.3 → XP_012981901.1  CUGBP Elav-like family member 3 isoform X1

    See identical proteins and their annotated locations for XP_012981901.1

    UniProtKB/TrEMBL
    A0A1U8CQW5, A0A3Q0CHI3
    Conserved Domains (4) summary
    PRK12323
    Location:214 → 376
    PRK12323; DNA polymerase III subunit gamma/tau
    cd12639
    Location:373 → 451
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  11. XM_021223894.2 → XP_021079553.1  CUGBP Elav-like family member 3 isoform X7

    UniProtKB/TrEMBL
    A0A3Q0CGB3, A0A3Q0CHI3
    Conserved Domains (4) summary
    cd12635
    Location:61 → 141
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12639
    Location:340 → 418
    RRM3_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cl17169
    Location:15 → 55
    RRM_SF; RNA recognition motif (RRM) superfamily
    cl25887
    Location:13 → 268
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  12. XM_040752276.1 → XP_040608210.1  CUGBP Elav-like family member 3 isoform X10

    UniProtKB/TrEMBL
    A0A1U8CR25, A0A3Q0CHI3
    Conserved Domains (3) summary
    cd12639
    Location:297 → 375
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    TIGR01661
    Location:21 → 382
    ELAV_HUD_SF; ELAV/HuD family splicing factor
    cd12635
    Location:18 → 98
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  13. XM_040752272.1 → XP_040608206.1  CUGBP Elav-like family member 3 isoform X4

    Related
    ENSMAUP00000005837.2, ENSMAUT00000009599.2
    Conserved Domains (1) summary
    TIGR01628
    Location:9 → 301
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
Nucleotide Protein Strain
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