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Zc3h12c zinc finger CCCH-type containing 12C [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101831928, updated on 8-Mar-2024

Summary

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Gene symbol
Zc3h12c
Gene description
zinc finger CCCH-type containing 12C
See related
EnsemblRapid:ENSMAUG00000020412
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Zc3h12c in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429203.1 (30726631..30783855, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801622.1 (14716709..14773909, complement)

NW_024429203.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110339669 Neighboring gene Rho GTPase activating protein 20 Neighboring gene ferredoxin 1 Neighboring gene radixin Neighboring gene uncharacterized LOC121133554 Neighboring gene chromosome unknown C11orf87 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ribonuclease ZC3H12C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429203.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    30726631..30783855 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013112904.3 → XP_012968358.1  probable ribonuclease ZC3H12C isoform X5

    UniProtKB/TrEMBL
    A0A1U8BXU8
    Related
    ENSMAUP00000023199.2, ENSMAUT00000027206.2
    Conserved Domains (2) summary
    PHA03160
    Location:501 → 744
    PHA03160; hypothetical protein; Provisional
    pfam11977
    Location:246 → 402
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain

  2. XM_040729981.1 → XP_040585915.1  probable ribonuclease ZC3H12C isoform X1

    Related
    ENSMAUP00000032978.1, ENSMAUT00000071445.1
    Conserved Domains (2) summary
    cl25932
    Location:520 → 763
    Peptidase_S21; Assemblin (Peptidase family S21)
    cd18729
    Location:269 → 399
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins

  3. XM_040729982.1 → XP_040585916.1  probable ribonuclease ZC3H12C isoform X3

    Conserved Domains (2) summary
    cl25932
    Location:494 → 737
    Peptidase_S21; Assemblin (Peptidase family S21)
    cd18729
    Location:243 → 373
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins

  4. XM_040729983.1 → XP_040585917.1  probable ribonuclease ZC3H12C isoform X4

    Related
    ENSMAUP00000023195.2, ENSMAUT00000027202.2
    Conserved Domains (2) summary
    cl25932
    Location:469 → 712
    Peptidase_S21; Assemblin (Peptidase family S21)
    cd18729
    Location:218 → 348
    PIN_Zc3h12-like; PRORP-like PIN domain of ribonuclease Zc3h12a and related proteins

  5. XM_021226820.2 → XP_021082479.1  probable ribonuclease ZC3H12C isoform X2

    UniProtKB/TrEMBL
    A0A3Q0CR24
    Related
    ENSMAUP00000044998.1, ENSMAUT00000035150.1
    Conserved Domains (2) summary
    pfam11977
    Location:247 → 402
    RNase_Zc3h12a; Zc3h12a-like Ribonuclease NYN domain
    cl25932
    Location:501 → 744
    Peptidase_S21; Assemblin (Peptidase family S21)
Nucleotide Protein
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