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Slc38a1 solute carrier family 38 member 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101831642, updated on 8-Mar-2024

Summary

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Gene symbol
Slc38a1
Gene description
solute carrier family 38 member 1
See related
EnsemblRapid:ENSMAUG00000009292
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Slc38a1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429194.1 (68956610..69022085)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801613.1 (18551607..18617587, complement)

NW_024429194.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121142897 Neighboring gene solute carrier family 38 member 2 Neighboring gene uncharacterized LOC121142972 Neighboring gene uncharacterized LOC110340414 Neighboring gene 40S ribosomal protein S19-like Neighboring gene SR-related CTD associated factor 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-glutamine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in amino acid transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glutamine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium-coupled neutral amino acid transporter 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429194.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    68956610..69022085
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040753910.1 → XP_040609844.1  sodium-coupled neutral amino acid transporter 1

    UniProtKB/TrEMBL
    A0A3Q0CKR7
    Conserved Domains (1) summary
    cl00456
    Location:69 → 472
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_040753907.1 → XP_040609841.1  sodium-coupled neutral amino acid transporter 1

    UniProtKB/TrEMBL
    A0A3Q0CKR7
    Related
    ENSMAUP00000007725.2, ENSMAUT00000011537.2
    Conserved Domains (1) summary
    cl00456
    Location:69 → 472
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_040753905.1 → XP_040609839.1  sodium-coupled neutral amino acid transporter 1

    UniProtKB/TrEMBL
    A0A3Q0CKR7
    Conserved Domains (1) summary
    cl00456
    Location:69 → 472
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  4. XM_040753906.1 → XP_040609840.1  sodium-coupled neutral amino acid transporter 1

    UniProtKB/TrEMBL
    A0A3Q0CKR7
    Related
    ENSMAUP00000038443.1, ENSMAUT00000066129.1
    Conserved Domains (1) summary
    cl00456
    Location:69 → 472
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  5. XM_040753908.1 → XP_040609842.1  sodium-coupled neutral amino acid transporter 1

    UniProtKB/TrEMBL
    A0A3Q0CKR7
    Conserved Domains (1) summary
    cl00456
    Location:69 → 472
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  6. XM_040753909.1 → XP_040609843.1  sodium-coupled neutral amino acid transporter 1

    UniProtKB/TrEMBL
    A0A3Q0CKR7
    Conserved Domains (1) summary
    cl00456
    Location:69 → 472
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
Nucleotide Protein Strain
Heading Accession and Version

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