U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Aire autoimmune regulator [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101830776, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Aire
Gene description
autoimmune regulator
See related
EnsemblRapid:ENSMAUG00000021943
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Aire in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429208.1 (8580643..8591841)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801628.1 (2224611..2235357)

NW_024429208.1Genomic Context describing neighboring genes Neighboring gene inducible T cell costimulator ligand Neighboring gene uncharacterized LOC121134314 Neighboring gene DNA methyltransferase 3 like Neighboring gene phosphofructokinase, liver type Neighboring gene cilia and flagella associated protein 410

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in humoral immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
autoimmune regulator

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429208.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    8580643..8591841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021227501.2 → XP_021083160.1  autoimmune regulator isoform X3

    UniProtKB/TrEMBL
    A0A3Q0CKQ0
    Conserved Domains (4) summary
    cd15539
    Location:300 → 342
    PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
    cd15540
    Location:426 → 468
    PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
    pfam03172
    Location:17 → 104
    HSR; HSR domain
    cl02536
    Location:198 → 264
    SAND; SAND domain

  2. XM_005070695.4 → XP_005070752.1  autoimmune regulator isoform X2

    UniProtKB/TrEMBL
    A0A1U7QMK3
    Conserved Domains (4) summary
    cd15539
    Location:299 → 341
    PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
    cd15540
    Location:425 → 467
    PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
    pfam03172
    Location:17 → 103
    Sp100; Sp100 domain
    cl02536
    Location:198 → 264
    SAND; SAND domain

  3. XM_021227502.2 → XP_021083161.1  autoimmune regulator isoform X4

    UniProtKB/TrEMBL
    A0A3Q0CR34
    Conserved Domains (4) summary
    cd15539
    Location:262 → 304
    PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
    cd15540
    Location:388 → 430
    PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
    pfam03172
    Location:17 → 104
    HSR; HSR domain
    cl02536
    Location:178 → 226
    SAND; SAND domain

  4. XM_005070694.4 → XP_005070751.1  autoimmune regulator isoform X1

    UniProtKB/TrEMBL
    A0A1U7QC24
    Related
    ENSMAUP00000025388.1, ENSMAUT00000029410.2
    Conserved Domains (4) summary
    cd15539
    Location:300 → 342
    PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
    cd15540
    Location:426 → 468
    PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
    pfam03172
    Location:17 → 103
    Sp100; Sp100 domain
    cl02536
    Location:198 → 264
    SAND; SAND domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.