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Rrp1 ribosomal RNA processing 1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101830154, updated on 8-Mar-2024

Summary

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Gene symbol
Rrp1
Gene description
ribosomal RNA processing 1
See related
EnsemblRapid:ENSMAUG00000017653
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Rrp1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429208.1 (8228115..8240743)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801628.1 (1843171..1855831)

NW_024429208.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110340966 Neighboring gene cystatin B Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 3 Neighboring gene uncharacterized LOC121134277 Neighboring gene uncharacterized LOC121134276

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, large subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosomal RNA processing protein 1 homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429208.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    8228115..8240743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040732253.1 → XP_040588187.1  ribosomal RNA processing protein 1 homolog A isoform X1

    UniProtKB/TrEMBL
    A0A3Q0CKP1
    Related
    ENSMAUP00000019358.2, ENSMAUT00000023333.2
    Conserved Domains (1) summary
    pfam05997
    Location:11 → 219
    Nop52; Nucleolar protein,Nop52

  2. XM_040732254.1 → XP_040588188.1  ribosomal RNA processing protein 1 homolog A isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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