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Zbtb6 zinc finger and BTB domain containing 6 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101830009, updated on 8-Mar-2024

Summary

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Gene symbol
Zbtb6
Gene description
zinc finger and BTB domain containing 6
See related
EnsemblRapid:ENSMAUG00000000804
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Zbtb6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429224.1 (2242778..2259604, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801726.1 (4722260..4725673)

NW_024429224.1Genomic Context describing neighboring genes Neighboring gene phosducin like Neighboring gene ring finger and CCCH-type domains 2 Neighboring gene small nucleolar RNA SNORD90 Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene RAB GTPase activating protein 1 Neighboring gene nucleoporin Nup37-like Neighboring gene G protein-coupled receptor 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429224.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    2242778..2259604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013122016.3 → XP_012977470.1  zinc finger and BTB domain-containing protein 6 isoform X2

    See identical proteins and their annotated locations for XP_012977470.1

    UniProtKB/TrEMBL
    A0A1U8CDI7
    Related
    ENSMAUP00000001069.1, ENSMAUT00000001100.2
    Conserved Domains (5) summary
    smart00225
    Location:34 → 127
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:325 → 347
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:23 → 123
    BTB; BTB/POZ domain
    pfam13465
    Location:339 → 363
    zf-H2C2_2; Zinc-finger double domain

  2. XM_013122015.3 → XP_012977469.1  zinc finger and BTB domain-containing protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A1U8CPW6
    Conserved Domains (6) summary
    smart00225
    Location:41 → 134
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:330 → 405
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:334 → 354
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:332 → 354
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:30 → 130
    BTB; BTB/POZ domain
    pfam13465
    Location:346 → 370
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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