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Lypd5 LY6/PLAUR domain containing 5 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101827894, updated on 8-Mar-2024

Summary

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Gene symbol
Lypd5
Gene description
LY6/PLAUR domain containing 5
See related
EnsemblRapid:ENSMAUG00000040021
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Lypd5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429216.1 (10366104..10371429, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801821.1 (1449033..1454479)

NW_024429216.1Genomic Context describing neighboring genes Neighboring gene potassium calcium-activated channel subfamily N member 4 Neighboring gene uncharacterized LOC121135575 Neighboring gene calcineurin B homologous protein 3-like Neighboring gene uncharacterized LOC106022547

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ly6/PLAUR domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429216.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    10366104..10371429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040734645.1 → XP_040590579.1  ly6/PLAUR domain-containing protein 5

    UniProtKB/TrEMBL
    A0A3Q0C9T5
    Related
    ENSMAUP00000055883.1, ENSMAUT00000054230.1
    Conserved Domains (1) summary
    pfam00021
    Location:133 → 212
    UPAR_LY6; u-PAR/Ly-6 domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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