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Son SON DNA and RNA binding protein [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101827847, updated on 8-Mar-2024

Summary

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Gene symbol
Son
Gene description
SON DNA and RNA binding protein
See related
EnsemblRapid:ENSMAUG00000027037
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Son in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429192.1 (6006864..6038588, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801646.1 (6229940..6268465, complement)

NW_024429192.1Genomic Context describing neighboring genes Neighboring gene intersectin 1 Neighboring gene uncharacterized LOC110341603 Neighboring gene uncharacterized LOC110341604 Neighboring gene crystallin zeta like 1 Neighboring gene DNA replication fork stabilization factor DONSON Neighboring gene phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase Neighboring gene DnaJ heat shock protein family (Hsp40) member C28

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SON
Names
SON DNA binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429192.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    6006864..6038588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040750465.1 → XP_040606399.1  protein SON isoform X1

    Related
    ENSMAUP00000035838.1, ENSMAUT00000031728.1
    Conserved Domains (8) summary
    smart00443
    Location:2325 → 2371
    G_patch; glycine rich nucleic binding domain
    PHA03379
    Location:335 → 670
    PHA03379; EBNA-3A; Provisional
    PRK10811
    Location:1199 → 1468
    rne; ribonuclease E; Reviewed
    PRK14951
    Location:1339 → 1469
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:218 → 431
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam08430
    Location:1000 → 1123
    Forkhead_N; Forkhead N-terminal region
    NF000535
    Location:727 → 907
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    cd19870
    Location:2391 → 2465
    DSRM_SON-like; double-stranded RNA binding motif of protein SON and similar proteins

  2. XM_040750473.1 → XP_040606407.1  protein SON isoform X6

    Conserved Domains (6) summary
    smart00443
    Location:1974 → 2020
    G_patch; glycine rich nucleic binding domain
    PHA03379
    Location:4 → 319
    PHA03379; EBNA-3A; Provisional
    PRK10811
    Location:848 → 1117
    rne; ribonuclease E; Reviewed
    PRK14951
    Location:988 → 1118
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    NF000535
    Location:376 → 556
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    cd19870
    Location:2040 → 2114
    DSRM_SON-like; double-stranded RNA binding motif of protein SON and similar proteins

  3. XM_040750466.1 → XP_040606400.1  protein SON isoform X2

    Related
    ENSMAUP00000045892.1, ENSMAUT00000070485.1
    Conserved Domains (8) summary
    smart00443
    Location:2325 → 2371
    G_patch; glycine rich nucleic binding domain
    PHA03379
    Location:335 → 670
    PHA03379; EBNA-3A; Provisional
    PRK10811
    Location:1199 → 1468
    rne; ribonuclease E; Reviewed
    PRK14951
    Location:1339 → 1469
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:218 → 431
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    pfam08430
    Location:1000 → 1123
    Forkhead_N; Forkhead N-terminal region
    NF000535
    Location:727 → 907
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    cd19870
    Location:2391 → 2441
    DSRM_SON-like; double-stranded RNA binding motif of protein SON and similar proteins

  4. XM_040750468.1 → XP_040606402.1  protein SON isoform X3

    Conserved Domains (5) summary
    PHA03379
    Location:335 → 670
    PHA03379; EBNA-3A; Provisional
    PRK10811
    Location:1199 → 1466
    rne; ribonuclease E; Reviewed
    PRK14951
    Location:1339 → 1469
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:218 → 431
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    NF000535
    Location:727 → 907
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

  5. XM_040750467.1 → XP_040606401.1  protein SON isoform X3

    Conserved Domains (5) summary
    PHA03379
    Location:335 → 670
    PHA03379; EBNA-3A; Provisional
    PRK10811
    Location:1199 → 1466
    rne; ribonuclease E; Reviewed
    PRK14951
    Location:1339 → 1469
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:218 → 431
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    NF000535
    Location:727 → 907
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

  6. XM_040750470.1 → XP_040606404.1  protein SON isoform X4

    Related
    ENSMAUP00000050504.1, ENSMAUT00000070800.1
    Conserved Domains (5) summary
    PHA03379
    Location:335 → 670
    PHA03379; EBNA-3A; Provisional
    PRK10811
    Location:1199 → 1466
    rne; ribonuclease E; Reviewed
    PRK14951
    Location:1339 → 1469
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:218 → 431
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    NF000535
    Location:727 → 907
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

  7. XM_040750469.1 → XP_040606403.1  protein SON isoform X4

    Related
    ENSMAUP00000055397.1, ENSMAUT00000044734.1
    Conserved Domains (5) summary
    PHA03379
    Location:335 → 670
    PHA03379; EBNA-3A; Provisional
    PRK10811
    Location:1199 → 1466
    rne; ribonuclease E; Reviewed
    PRK14951
    Location:1339 → 1469
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:218 → 431
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    NF000535
    Location:727 → 907
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

  8. XM_040750471.1 → XP_040606405.1  protein SON isoform X5

    Related
    ENSMAUP00000050082.1, ENSMAUT00000031060.1
    Conserved Domains (5) summary
    PHA03379
    Location:335 → 670
    PHA03379; EBNA-3A; Provisional
    PRK10811
    Location:1199 → 1466
    rne; ribonuclease E; Reviewed
    PRK14951
    Location:1339 → 1469
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:218 → 431
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    NF000535
    Location:727 → 907
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

  9. XM_040750474.1 → XP_040606408.1  protein SON isoform X7

    Conserved Domains (5) summary
    PHA03379
    Location:335 → 670
    PHA03379; EBNA-3A; Provisional
    PRK10811
    Location:1199 → 1466
    rne; ribonuclease E; Reviewed
    PRK14951
    Location:1339 → 1469
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    pfam05109
    Location:218 → 431
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    NF000535
    Location:727 → 907
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC

RNA

  1. XR_005878822.1 RNA Sequence

  2. XR_005878824.1 RNA Sequence

  3. XR_005878823.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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