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Epb41 erythrocyte membrane protein band 4.1 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101825595, updated on 8-Mar-2024

Summary

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Gene symbol
Epb41
Gene description
erythrocyte membrane protein band 4.1
See related
EnsemblRapid:ENSMAUG00000036438
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Epb41 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429197.1 (11270333..11422269)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801696.1 (5028922..5154525, complement)

NW_024429197.1Genomic Context describing neighboring genes Neighboring gene YTH N6-methyladenosine RNA binding protein F2 Neighboring gene opioid receptor delta 1 Neighboring gene transmembrane protein 200B Neighboring gene serine and arginine rich splicing factor 4 Neighboring gene mitochondrial trans-2-enoyl-CoA reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cortical actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein 4.1
Names
erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429197.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    11270333..11422269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040756470.1 → XP_040612404.1  protein 4.1 isoform X8

    Conserved Domains (2) summary
    smart00295
    Location:2 → 192
    B41; Band 4.1 homologues
    cd13184
    Location:187 → 280
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family

  2. XM_040756464.1 → XP_040612398.1  protein 4.1 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0D567
    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:9 → 199
    MARCKS; MARCKS family

  3. XM_040756472.1 → XP_040612406.1  protein 4.1 isoform X9

    UniProtKB/TrEMBL
    A0A3Q0D567
    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family

  4. XM_040756468.1 → XP_040612402.1  protein 4.1 isoform X6

    UniProtKB/TrEMBL
    A0A3Q0D567
    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:9 → 199
    MARCKS; MARCKS family

  5. XM_040756473.1 → XP_040612407.1  protein 4.1 isoform X10

    UniProtKB/TrEMBL
    A0A3Q0D567
    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family

  6. XM_040756465.1 → XP_040612399.1  protein 4.1 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0D567
    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:9 → 199
    MARCKS; MARCKS family

  7. XM_040756474.1 → XP_040612408.1  protein 4.1 isoform X11

    UniProtKB/TrEMBL
    A0A3Q0D567
    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family

  8. XM_040756466.1 → XP_040612400.1  protein 4.1 isoform X4

    UniProtKB/TrEMBL
    A0A3Q0D567
    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:9 → 199
    MARCKS; MARCKS family

  9. XM_040756475.1 → XP_040612409.1  protein 4.1 isoform X12

    UniProtKB/TrEMBL
    A0A3Q0D567
    Related
    ENSMAUP00000060613.1, ENSMAUT00000042203.1
    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family

  10. XM_040756467.1 → XP_040612401.1  protein 4.1 isoform X5

    UniProtKB/TrEMBL
    A0A3Q0D567
    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:9 → 199
    MARCKS; MARCKS family

  11. XM_040756478.1 → XP_040612412.1  protein 4.1 isoform X15

    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family

  12. XM_040756463.1 → XP_040612397.1  protein 4.1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0D567
    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:9 → 199
    MARCKS; MARCKS family

  13. XM_040756469.1 → XP_040612403.1  protein 4.1 isoform X7

    UniProtKB/TrEMBL
    A0A3Q0D567
    Conserved Domains (2) summary
    smart00295
    Location:153 → 331
    B41; Band 4.1 homologues
    cd13184
    Location:326 → 419
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family

  14. XM_040756476.1 → XP_040612410.1  protein 4.1 isoform X13

    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family

  15. XM_040756477.1 → XP_040612411.1  protein 4.1 isoform X14

    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family

  16. XM_040756479.1 → XP_040612413.1  protein 4.1 isoform X16

    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family

  17. XM_040756481.1 → XP_040612415.1  protein 4.1 isoform X18

    Related
    ENSMAUP00000057754.1, ENSMAUT00000075671.1
    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family

  18. XM_040756484.1 → XP_040612418.1  protein 4.1 isoform X20

    Related
    ENSMAUP00000036943.1, ENSMAUT00000043593.1
    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family

  19. XM_040756485.1 → XP_040612419.1  protein 4.1 isoform X21

    Related
    ENSMAUP00000055143.1, ENSMAUT00000055762.1
    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family

  20. XM_040756480.1 → XP_040612414.1  protein 4.1 isoform X17

    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family

  21. XM_040756483.1 → XP_040612417.1  protein 4.1 isoform X19

    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family

  22. XM_040756486.1 → XP_040612420.1  protein 4.1 isoform X22

    Conserved Domains (3) summary
    smart00295
    Location:211 → 401
    B41; Band 4.1 homologues
    cd13184
    Location:396 → 489
    FERM_C_4_1_family; FERM domain C-lobe of Protein 4.1 family
    pfam02063
    Location:20 → 199
    MARCKS; MARCKS family
Nucleotide Protein Strain
Heading Accession and Version

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