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Capn3 calpain 3 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101822522, updated on 8-Mar-2024

Summary

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Gene symbol
Capn3
Gene description
calpain 3
See related
EnsemblRapid:ENSMAUG00000019821
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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See Capn3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429189.1 (87064406..87111657)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801605.1 (3450424..3490908, complement)

NW_024429189.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S25-like Neighboring gene transmembrane protein 87A Neighboring gene glucosidase alpha, neutral C Neighboring gene zinc finger protein 106 Neighboring gene synaptosome associated protein 23

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429189.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    87064406..87111657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040746102.1 → XP_040602036.1  calpain-3 isoform X1

    Related
    ENSMAUP00000046664.1, ENSMAUT00000071059.1
    Conserved Domains (3) summary
    smart00230
    Location:61 → 425
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:427 → 583
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd16190
    Location:653 → 821
    EFh_PEF_CAPN3; Calcium-activated neutral

  2. XM_040746103.1 → XP_040602037.1  calpain-3 isoform X2

    Related
    ENSMAUP00000004466.2, ENSMAUT00000007090.2
    Conserved Domains (3) summary
    smart00230
    Location:61 → 425
    CysPc; Calpain-like thiol protease family
    cd00214
    Location:427 → 583
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    cd16190
    Location:647 → 815
    EFh_PEF_CAPN3; Calcium-activated neutral

  3. XM_040746104.1 → XP_040602038.1  calpain-3 isoform X3

    Conserved Domains (2) summary
    cd16190
    Location:141 → 309
    EFh_PEF_CAPN3; Calcium-activated neutral
    cl00165
    Location:7 → 71
    Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
Nucleotide Protein
Heading Accession and Version

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