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Sgca sarcoglycan alpha [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101822397, updated on 8-Mar-2024

Summary

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Gene symbol
Sgca
Gene description
sarcoglycan alpha
See related
EnsemblRapid:ENSMAUG00000009888
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Also known as
50DAG; adhalin; Alpha-SG
Orthologs
human mouse all
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Genomic context

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See Sgca in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429191.1 (72834068..72843463, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801661.1 (7333445..7342835, complement)

NW_024429191.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121141468 Neighboring gene transmembrane protein 92 Neighboring gene collagen type I alpha 1 chain Neighboring gene spermatid-specific linker histone H1-like protein Neighboring gene protein phosphatase 1 regulatory subunit 9B Neighboring gene sterile alpha motif domain containing 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Adhalin mRNA and cDNA sequence are normal in the cardiomyopathic hamster. Roberds SL, et al. FEBS Lett, 1995 May 15. PMID 7758576
  2. Both hypertrophic and dilated cardiomyopathies are caused by mutation of the same gene, delta-sarcoglycan, in hamster: an animal model of disrupted dystrophin-associated glycoprotein complex. Sakamoto A, et al. Proc Natl Acad Sci U S A, 1997 Dec 9. PMID 9391120, Free PMC Article
  3. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan
Names
50 kDa dystrophin-associated glycoprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001281663.1 → NP_001268592.1  alpha-sarcoglycan precursor

    See identical proteins and their annotated locations for NP_001268592.1

    Status: PROVISIONAL

    Source sequence(s)
    D83651
    UniProtKB/Swiss-Prot
    Q64255
    UniProtKB/TrEMBL
    A0A1U7Q2D7
    Related
    ENSMAUP00000008480.2, ENSMAUT00000012306.2
    Conserved Domains (1) summary
    pfam05510
    Location:8 → 347
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429191.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    72834068..72843463 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q64255.1 GenPept UniProtKB/Swiss-Prot:Q64255

Gene LinkOut

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