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SGCD sarcoglycan delta [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101820628, updated on 3-Aug-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
See related
Ensembl:ENSFALG00000008378
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 13 NC_021685.1 (4607040..4924563, complement)

Chromosome 13 - NC_021685.1Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 1 homolog Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem nuclear organelle associated protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021685.1 Chromosome 13 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021685.1 Reference FicAlb1.5 Primary Assembly

    Range
    4607040..4924563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016301694.1 → XP_016157180.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A803WD85
    Conserved Domains (1) summary
    pfam04790
    Location:27 → 231
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_005053525.2 → XP_005053582.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A803WD85
    Conserved Domains (1) summary
    pfam04790
    Location:27 → 231
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_016301695.1 → XP_016157181.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A803WD85, U3K132
    Related
    ENSFALP00000008736.2, ENSFALT00000008774.2
Nucleotide Protein
Heading Accession and Version

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