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LPIN1 lipin 1 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101818585, updated on 3-Aug-2024

Summary

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Gene symbol
LPIN1
Gene description
lipin 1
See related
Ensembl:ENSFALG00000006735
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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See LPIN1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
26
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 3 NC_021674.1 (102481498..102566369)

Chromosome 3 - NC_021674.1Genomic Context describing neighboring genes Neighboring gene E2F transcription factor 6 Neighboring gene growth regulating estrogen receptor binding 1 Neighboring gene tribbles pseudokinase 2 Neighboring gene LRAT domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021674.1 Chromosome 3 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to insulin stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidate phosphatase LPIN1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021674.1 Reference FicAlb1.5 Primary Assembly

    Range
    102481498..102566369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005044281.2 → XP_005044338.1  phosphatidate phosphatase LPIN1 isoform X1

    UniProtKB/TrEMBL
    A0A803VM34, U3JW89
    Related
    ENSFALP00000023790.1, ENSFALT00000040950.1
    Conserved Domains (4) summary
    pfam15017
    Location:897 → 942
    AF1Q; Drug resistance and apoptosis regulator
    pfam04571
    Location:42 → 147
    Lipin_N; lipin, N-terminal conserved region
    pfam08235
    Location:678 → 903
    LNS2; LNS2 (Lipin/Ned1/Smp2)
    pfam16876
    Location:512 → 602
    Lipin_mid; Lipin/Ned1/Smp2 multi-domain protein middle domain

  2. XM_016297571.1 → XP_016153057.1  phosphatidate phosphatase LPIN1 isoform X1

    UniProtKB/TrEMBL
    A0A803VM34, U3JW89
    Conserved Domains (4) summary
    pfam15017
    Location:897 → 942
    AF1Q; Drug resistance and apoptosis regulator
    pfam04571
    Location:42 → 147
    Lipin_N; lipin, N-terminal conserved region
    pfam08235
    Location:678 → 903
    LNS2; LNS2 (Lipin/Ned1/Smp2)
    pfam16876
    Location:512 → 602
    Lipin_mid; Lipin/Ned1/Smp2 multi-domain protein middle domain

  3. XM_016297575.1 → XP_016153061.1  phosphatidate phosphatase LPIN1 isoform X5

  4. XM_016297576.1 → XP_016153062.1  phosphatidate phosphatase LPIN1 isoform X6

    UniProtKB/TrEMBL
    A0A803VUE8, U3JW89
    Related
    ENSFALP00000026354.1, ENSFALT00000034533.1

  5. XM_016297572.1 → XP_016153058.1  phosphatidate phosphatase LPIN1 isoform X2

    UniProtKB/TrEMBL
    U3JW89

  6. XM_016297574.1 → XP_016153060.1  phosphatidate phosphatase LPIN1 isoform X4

    UniProtKB/TrEMBL
    U3JW89

  7. XM_016297573.1 → XP_016153059.1  phosphatidate phosphatase LPIN1 isoform X3

    UniProtKB/TrEMBL
    U3JW89
    Related
    ENSFALP00000007043.2, ENSFALT00000007074.2
Nucleotide Protein
Heading Accession and Version

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