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ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101815960, updated on 3-Aug-2024

Summary

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Gene symbol
ST3GAL6
Gene description
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
See related
Ensembl:ENSFALG00000005771
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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See ST3GAL6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 1 NC_021671.1 (99108322..99497260)

Chromosome 1 - NC_021671.1Genomic Context describing neighboring genes Neighboring gene calsequestrin 2 Neighboring gene nescient helix-loop-helix 2 Neighboring gene solute carrier family 22 member 15 Neighboring gene mab-21 like 3 Neighboring gene ATPase Na+/K+ transporting subunit alpha 1 Neighboring gene T-box transcription factor 19 Neighboring gene SFT2 domain containing 2 Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene TOR signaling pathway regulator Neighboring gene G protein-coupled receptor 161 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene transcription termination factor 2 Neighboring gene coproporphyrinogen oxidase Neighboring gene collagen type VIII alpha 1 chain Neighboring gene discoidin, CUB and LCCL domain containing 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021671.1 Chromosome 1 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type 2 lactosamine alpha-2,3-sialyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021671.1 Reference FicAlb1.5 Primary Assembly

    Range
    99108322..99497260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016296106.1 → XP_016151592.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A803V096, A0A803V0K5
    Conserved Domains (1) summary
    pfam00777
    Location:110 → 356
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_005038644.1 → XP_005038701.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

    See identical proteins and their annotated locations for XP_005038701.1

    UniProtKB/TrEMBL
    A0A803V096, A0A803V0K5
    Conserved Domains (1) summary
    pfam00777
    Location:110 → 356
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_005038641.2 → XP_005038698.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

    See identical proteins and their annotated locations for XP_005038698.1

    UniProtKB/TrEMBL
    A0A803V096, A0A803V0K5
    Conserved Domains (1) summary
    pfam00777
    Location:110 → 356
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_005038642.2 → XP_005038699.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

    See identical proteins and their annotated locations for XP_005038699.1

    UniProtKB/TrEMBL
    A0A803V096, A0A803V0K5
    Conserved Domains (1) summary
    pfam00777
    Location:110 → 356
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  5. XM_005038643.2 → XP_005038700.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

    See identical proteins and their annotated locations for XP_005038700.1

    UniProtKB/TrEMBL
    A0A803V096, A0A803V0K5
    Related
    ENSFALP00000016152.1, ENSFALT00000032277.1
    Conserved Domains (1) summary
    pfam00777
    Location:110 → 356
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  6. XM_005038645.2 → XP_005038702.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

    See identical proteins and their annotated locations for XP_005038702.1

    UniProtKB/TrEMBL
    A0A803V096, A0A803V0K5
    Related
    ENSFALP00000016261.1, ENSFALT00000039407.1
    Conserved Domains (1) summary
    pfam00777
    Location:110 → 356
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  7. XM_005038638.1 → XP_005038695.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A803V096, U3JTB8
    Related
    ENSFALP00000006022.1, ENSFALT00000006049.2
    Conserved Domains (1) summary
    pfam00777
    Location:138 → 384
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  8. XM_005038640.1 → XP_005038697.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A803V096
    Conserved Domains (1) summary
    pfam00777
    Location:111 → 357
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  9. XM_005038649.1 → XP_005038706.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

    See identical proteins and their annotated locations for XP_005038706.1

    UniProtKB/TrEMBL
    A0A803V096, A0A803V0K5
    Conserved Domains (1) summary
    pfam00777
    Location:110 → 356
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  10. XM_005038647.1 → XP_005038704.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

    See identical proteins and their annotated locations for XP_005038704.1

    UniProtKB/TrEMBL
    A0A803V096, A0A803V0K5
    Conserved Domains (1) summary
    pfam00777
    Location:110 → 356
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  11. XM_005038639.1 → XP_005038696.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A803V096, A0A803W4L2
    Related
    ENSFALP00000029918.1, ENSFALT00000027877.1
    Conserved Domains (1) summary
    pfam00777
    Location:123 → 369
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  12. XM_005038653.1 → XP_005038710.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X5

    See identical proteins and their annotated locations for XP_005038710.1

    UniProtKB/TrEMBL
    A0A803V096, A0A803VTE2
    Conserved Domains (1) summary
    pfam00777
    Location:102 → 347
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  13. XM_005038651.2 → XP_005038708.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X5

    See identical proteins and their annotated locations for XP_005038708.1

    UniProtKB/TrEMBL
    A0A803V096, A0A803VTE2
    Related
    ENSFALP00000025998.1, ENSFALT00000031693.1
    Conserved Domains (1) summary
    pfam00777
    Location:102 → 347
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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