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SGCG sarcoglycan gamma [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101814068, updated on 3-Aug-2024

Summary

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Gene symbol
SGCG
Gene description
sarcoglycan gamma
See related
Ensembl:ENSFALG00000008702
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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See SGCG in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) 1 NC_021671.1 (74678860..74787541, complement)

Chromosome 1 - NC_021671.1Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 19 Neighboring gene sacsin molecular chaperone Neighboring gene uncharacterized LOC101814979 Neighboring gene fibroblast growth factor 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021671.1 Chromosome 1 Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan
Names
sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021671.1 Reference FicAlb1.5 Primary Assembly

    Range
    74678860..74787541 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005038087.2 → XP_005038144.1  gamma-sarcoglycan

    See identical proteins and their annotated locations for XP_005038144.1

    UniProtKB/TrEMBL
    A0A803W4J7, U3K231
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_005038085.2 → XP_005038142.1  gamma-sarcoglycan

    See identical proteins and their annotated locations for XP_005038142.1

    UniProtKB/TrEMBL
    A0A803W4J7, U3K231
    Related
    ENSFALP00000029903.1, ENSFALT00000038553.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_005038086.2 → XP_005038143.1  gamma-sarcoglycan

    See identical proteins and their annotated locations for XP_005038143.1

    UniProtKB/TrEMBL
    A0A803W4J7, U3K231
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_005038088.1 → XP_005038145.1  gamma-sarcoglycan

    See identical proteins and their annotated locations for XP_005038145.1

    UniProtKB/TrEMBL
    A0A803W4J7, U3K231
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_005038089.2 → XP_005038146.1  gamma-sarcoglycan

    See identical proteins and their annotated locations for XP_005038146.1

    UniProtKB/TrEMBL
    A0A803W4J7, U3K231
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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