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CNTFR ciliary neurotrophic factor receptor [ Ficedula albicollis (Collared flycatcher) ]

Gene ID: 101810083, updated on 3-Aug-2024

Summary

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Gene symbol
CNTFR
Gene description
ciliary neurotrophic factor receptor
See related
Ensembl:ENSFALG00000009813
Gene type
protein coding
RefSeq status
MODEL
Organism
Ficedula albicollis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Muscicapidae; Ficedula
Orthologs
human mouse all
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Genomic context

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See CNTFR in Genome Data Viewer
Location:
chromosome: Z
Exon count:
12
Annotation release Status Assembly Chr Location
101 current FicAlb1.5 (GCF_000247815.1) Z NC_021700.1 (8463888..8672031)

Chromosome Z - NC_021700.1Genomic Context describing neighboring genes Neighboring gene sigma non-opioid intracellular receptor 1 Neighboring gene galactose-1-phosphate uridylyltransferase Neighboring gene interleukin 11 receptor subunit alpha Neighboring gene C-C motif chemokine ligand 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021700.1 Chromosome Z Reference FicAlb1.5 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ciliary neurotrophic factor receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokine-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CNTFR-CLCF1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ciliary neurotrophic factor receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ciliary neurotrophic factor receptor subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ficedula albicollis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference FicAlb1.5 Primary Assembly

Genomic

  1. NC_021700.1 Reference FicAlb1.5 Primary Assembly

    Range
    8463888..8672031
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005060384.2 → XP_005060441.1  ciliary neurotrophic factor receptor subunit alpha isoform X2

    See identical proteins and their annotated locations for XP_005060441.1

    UniProtKB/TrEMBL
    A0A803WGL7
    Conserved Domains (3) summary
    smart00408
    Location:36 → 93
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:34 → 102
    IG_like; Immunoglobulin like
    cd00063
    Location:201 → 297
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  2. XM_005060386.2 → XP_005060443.1  ciliary neurotrophic factor receptor subunit alpha isoform X2

    See identical proteins and their annotated locations for XP_005060443.1

    UniProtKB/TrEMBL
    A0A803WGL7
    Conserved Domains (3) summary
    smart00408
    Location:36 → 93
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:34 → 102
    IG_like; Immunoglobulin like
    cd00063
    Location:201 → 297
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  3. XM_016304765.1 → XP_016160251.1  ciliary neurotrophic factor receptor subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A803WGL7, U3K5D2
    Related
    ENSFALP00000010236.1, ENSFALT00000010276.2
    Conserved Domains (3) summary
    smart00408
    Location:51 → 108
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:49 → 117
    IG_like; Immunoglobulin like
    cd00063
    Location:216 → 312
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein
Heading Accession and Version

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