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LOC101780945 probable xyloglucan endotransglucosylase/hydrolase protein 26 [ Setaria italica (foxtail millet) ]

Gene ID: 101780945, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101780945
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 26
Locus tag
SETIT_007010mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC101780945 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) IV NC_028453.1 (24210069..24211515, complement)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675964.1 (24210490..24211679, complement)

Chromosome IV - NC_028453.1Genomic Context describing neighboring genes Neighboring gene cellulose synthase-like protein D5 Neighboring gene probable aquaporin TIP2-2 Neighboring gene probable diphthine methyl ester synthase Neighboring gene monooxygenase 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 26

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028453.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    24210069..24211515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004966974.2 → XP_004967031.1  probable xyloglucan endotransglucosylase/hydrolase protein 26

    UniProtKB/TrEMBL
    K3XYK2
    Conserved Domains (1) summary
    cd02176
    Location:25 → 291
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein Strain
Heading Accession and Version

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