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LOC101755937 probable pectinesterase 53 [ Setaria italica (foxtail millet) ]

Gene ID: 101755937, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101755937
Gene description
probable pectinesterase 53
Locus tag
SETIT_024215mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC101755937 in Genome Data Viewer
Location:
chromosome: III
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) III NC_028452.1 (42742281..42743665)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675963.1 (42742906..42744290)

Chromosome III - NC_028452.1Genomic Context describing neighboring genes Neighboring gene glycine-rich RNA-binding protein 2, mitochondrial Neighboring gene psbP domain-containing protein 1, chloroplastic Neighboring gene transcription factor JAMYB Neighboring gene intermediate cleaving peptidase 55, mitochondrial Neighboring gene rhodanese-like domain-containing protein 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectinesterase 53

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028452.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    42742281..42743665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004963992.1 → XP_004964049.1  probable pectinesterase 53

    UniProtKB/TrEMBL
    K3ZCE0
    Conserved Domains (1) summary
    cl27601
    Location:58 → 422
    Pectinesterase; Pectinesterase
Nucleotide Protein Strain
Heading Accession and Version

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