U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rt Protein O-mannosyltransferase rt [ Bombyx mori (domestic silkworm) ]

Gene ID: 101747223, updated on 22-May-2024

Summary

Go to the top of the page Help
Gene symbol
rt
Gene description
Protein O-mannosyltransferase rt
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 4 NC_085110.1 (12979485..12985852, complement)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 4 NC_051361.1 (12766135..12772508, complement)

Chromosome 4 - NC_085110.1Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase CYLD Neighboring gene probable phosphorylase b kinase regulatory subunit beta Neighboring gene Proteasome beta2 subunit Neighboring gene DnaJ homolog shv Neighboring gene ATPase WRNIP1 Neighboring gene DNA topoisomerase 1 Neighboring gene Ral guanine nucleotide dissociation stimulator-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori. Suetsugu Y, et al. G3 (Bethesda), 2013 Sep 4. PMID 23821615, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein O-mannosyltransferase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085110.1 Reference ASM3026992v2 Primary Assembly

    Range
    12979485..12985852 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004930884.4 → XP_004930941.1  protein O-mannosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8R1WJZ2, A0A8R2RAF8
    Conserved Domains (4) summary
    smart00472
    Location:348 → 404
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:50 → 772
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:79 → 312
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:567 → 769
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase

  2. XM_012694578.4 → XP_012550032.1  protein O-mannosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8R2GC01, A0A8R2RAF8
    Conserved Domains (4) summary
    smart00472
    Location:295 → 351
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:17 → 719
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:26 → 259
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:514 → 716
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials