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LOC101746449 aspartyl/asparaginyl beta-hydroxylase [ Bombyx mori (domestic silkworm) ]

Gene ID: 101746449, updated on 6-Jun-2024

Summary

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Gene symbol
LOC101746449
Gene description
aspartyl/asparaginyl beta-hydroxylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Orthologs
fruit fly all
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Genomic context

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See LOC101746449 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 5 NC_085111.1 (7539954..7555207)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 5 NC_051362.1 (7558055..7573289)

Chromosome 5 - NC_085111.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein K02A2.6 Neighboring gene Na[+]/H[+] hydrogen exchanger 3 Neighboring gene metallo-beta-lactamase domain-containing protein 1 Neighboring gene Sodium/potassium-transporting ATPase subunit beta-1-interacting protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori. Suetsugu Y, et al. G3 (Bethesda), 2013 Sep 4. PMID 23821615, Free PMC Article
  2. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085111.1 Reference ASM3026992v2 Primary Assembly

    Range
    7539954..7555207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012695690.3 → XP_012551144.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    UniProtKB/TrEMBL
    A0A8R2C9A0, A0A8R2C9D5
    Conserved Domains (3) summary
    COG0457
    Location:506 → 687
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:590 → 614
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:725 → 873
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_004932275.5 → XP_004932332.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    UniProtKB/TrEMBL
    A0A8R1WKX0, A0A8R2C9D2
    Conserved Domains (5) summary
    COG0457
    Location:680 → 861
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:764 → 788
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:899 → 1047
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    pfam07093
    Location:113 → 279
    SGT1; SGT1 protein
    pfam12226
    Location:126 → 204
    Astro_capsid_p; Turkey astrovirus capsid protein

  3. XM_062668603.1 → XP_062524587.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    UniProtKB/TrEMBL
    A0A8R2C905
Nucleotide Protein
Heading Accession and Version

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