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C1GalTA Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Bombyx mori (domestic silkworm) ]

Gene ID: 101746328, updated on 24-May-2024

Summary

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Gene symbol
C1GalTA
Gene description
Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Orthologs
fruit fly all
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Genomic context

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See C1GalTA in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 8 NC_085114.1 (2995552..3020037)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 8 NC_051365.1 (2966559..2991041)

Chromosome 8 - NC_085114.1Genomic Context describing neighboring genes Neighboring gene peroxisomal membrane anchor protein Neighboring gene uncharacterized LOC101746184 Neighboring gene rac GTPase-activating protein 1 Neighboring gene Protein C kinase 53E Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085114.1 Reference ASM3026992v2 Primary Assembly

    Range
    2995552..3020037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004925120.5 → XP_004925177.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8R1WG47, A0A8R2DLL5
    Conserved Domains (1) summary
    cl21608
    Location:106 → 233
    Galactosyl_T; Galactosyltransferase

  2. XM_021347321.3 → XP_021202996.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8R2DJZ4, A0A8R2DLL5
    Conserved Domains (1) summary
    cl21608
    Location:84 → 211
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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