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sfl N-deacetylase and N-sulfotransferase sfl [ Bombyx mori (domestic silkworm) ]

Gene ID: 101743047, updated on 22-May-2024

Summary

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Gene symbol
sfl
Gene description
N-deacetylase and N-sulfotransferase sfl
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Orthologs
fruit fly all
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Genomic context

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See sfl in Genome Data Viewer
Location:
chromosome: 22
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 22 NC_085128.1 (5911137..6014806, complement)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 22 NC_051379.1 (5931256..6034925, complement)

Chromosome 22 - NC_085128.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134200958 Neighboring gene uncharacterized LOC134201026 Neighboring gene uncharacterized LOC101742955 Neighboring gene uncharacterized LOC134200959 Neighboring gene uncharacterized LOC101744002

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori. Suetsugu Y, et al. G3 (Bethesda), 2013 Sep 4. PMID 23821615, Free PMC Article
  2. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085128.1 Reference ASM3026992v2 Primary Assembly

    Range
    5911137..6014806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012695350.3 → XP_012550804.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

    See identical proteins and their annotated locations for XP_012550804.1

    UniProtKB/TrEMBL
    A0A8R2C8V6
    Conserved Domains (2) summary
    pfam00685
    Location:621 → 869
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:53 → 532
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_004931907.5 → XP_004931964.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase

    See identical proteins and their annotated locations for XP_004931964.1

    UniProtKB/TrEMBL
    A0A8R2C8V6
    Conserved Domains (2) summary
    pfam00685
    Location:621 → 869
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:53 → 532
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
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