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sotv exostosin glycosyltransferase sotv [ Bombyx mori (domestic silkworm) ]

Gene ID: 101741346, updated on 22-May-2024

Summary

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Gene symbol
sotv
Gene description
exostosin glycosyltransferase sotv
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Orthologs
fruit fly all
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Genomic context

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See sotv in Genome Data Viewer
Location:
chromosome: 23
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 23 NC_085129.1 (2219848..2243145, complement)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 23 NC_051380.1 (2208024..2224542, complement)

Chromosome 23 - NC_085129.1Genomic Context describing neighboring genes Neighboring gene serum response factor blistered Neighboring gene uncharacterized LOC134201059 Neighboring gene uncharacterized LOC134201060 Neighboring gene guanine nucleotide-binding protein subunit beta-like protein 1 Neighboring gene uncharacterized LOC134201062 Neighboring gene Sine oculis-binding protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085129.1 Reference ASM3026992v2 Primary Assembly

    Range
    2219848..2243145 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038019456.2 → XP_037875384.1  exostosin-2

    UniProtKB/TrEMBL
    A0A8R2R7D6
    Conserved Domains (2) summary
    pfam03016
    Location:101 → 375
    Exostosin; Exostosin family
    pfam09258
    Location:449 → 690
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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Molecular Biology Databases
Research Materials