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LOC101738790 putative polypeptide N-acetylgalactosaminyltransferase 9 [ Bombyx mori (domestic silkworm) ]

Gene ID: 101738790, updated on 3-Apr-2024

Summary

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Gene symbol
LOC101738790
Gene description
putative polypeptide N-acetylgalactosaminyltransferase 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
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Genomic context

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See LOC101738790 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 8 NC_085114.1 (5545687..5552512)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 8 NC_051365.1 (5516594..5523359)

Chromosome 8 - NC_085114.1Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 9 Neighboring gene uncharacterized LOC101736308 Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene serine-enriched protein Neighboring gene uncharacterized LOC119628810

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large scale full-length cDNA sequencing reveals a unique genomic landscape in a lepidopteran model insect, Bombyx mori. Suetsugu Y, et al. G3 (Bethesda), 2013 Sep 4. PMID 23821615, Free PMC Article
  2. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polypeptide N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative polypeptide N-acetylgalactosaminyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085114.1 Reference ASM3026992v2 Primary Assembly

    Range
    5545687..5552512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038012651.2 → XP_037868579.1  putative polypeptide N-acetylgalactosaminyltransferase 9 isoform X1

    UniProtKB/TrEMBL
    A0A8R2LW49
    Conserved Domains (2) summary
    cd02510
    Location:153 → 449
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:460 → 578
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_038012653.2 → XP_037868581.1  putative polypeptide N-acetylgalactosaminyltransferase 9 isoform X1

    UniProtKB/TrEMBL
    A0A8R2LW49
    Conserved Domains (2) summary
    cd02510
    Location:153 → 449
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:460 → 578
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_038012654.2 → XP_037868582.1  putative polypeptide N-acetylgalactosaminyltransferase 9 isoform X2

    UniProtKB/TrEMBL
    A0A8R2LX34
    Conserved Domains (2) summary
    cd02510
    Location:133 → 429
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:440 → 558
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_062669922.1 → XP_062525906.1  putative polypeptide N-acetylgalactosaminyltransferase 9 isoform X1

    UniProtKB/TrEMBL
    A0A8R2LW49

  5. XM_062669921.1 → XP_062525905.1  putative polypeptide N-acetylgalactosaminyltransferase 9 isoform X1

    UniProtKB/TrEMBL
    A0A8R2LW49

  6. XM_062669923.1 → XP_062525907.1  putative polypeptide N-acetylgalactosaminyltransferase 9 isoform X3

  7. XM_038012652.2 → XP_037868580.1  putative polypeptide N-acetylgalactosaminyltransferase 9 isoform X1

    UniProtKB/TrEMBL
    A0A8R2LW49
    Conserved Domains (2) summary
    cd02510
    Location:153 → 449
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:460 → 578
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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